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MCL coexpression mm9:706

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:23976529..23976563,+p1@ENSMUST00000148087
Mm9::chr11:23976612..23976628,+p2@ENSMUST00000148087
Mm9::chr11:23977742..23977794,+p6@Bcl11a
Mm9::chr11:23977800..23977810,+p13@Bcl11a
Mm9::chr11:23977965..23977974,+p11@Bcl11a
Mm9::chr11:23978022..23978076,+p1@Bcl11a
Mm9::chr11:23978078..23978096,+p4@Bcl11a
Mm9::chr11:23978111..23978134,+p3@Bcl11a
Mm9::chr11:23980664..23980706,+p2@Bcl11a
Mm9::chr8:71708148..71708156,-p2@ENSMUST00000172413
p2@uc009lxb.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.62e-0823
neuroblast (sensu Vertebrata)1.62e-0823

Uber Anatomy
Ontology termp-valuen
gray matter7.36e-1434
brain grey matter4.27e-1229
regional part of telencephalon4.27e-1229
telencephalon4.27e-1229
anterior neural tube1.44e-1140
regional part of forebrain2.74e-1139
forebrain2.74e-1139
future forebrain2.74e-1139
neural tube2.93e-1152
neural rod2.93e-1152
future spinal cord2.93e-1152
neural keel2.93e-1152
regional part of nervous system4.15e-1154
ecto-epithelium7.70e-1173
pre-chordal neural plate1.16e-1049
cerebral cortex1.17e-1021
cerebral hemisphere1.17e-1021
pallium1.17e-1021
brain4.34e-1047
future brain4.34e-1047
neurectoderm5.94e-1064
neural plate5.94e-1064
presumptive neural plate5.94e-1064
regional part of brain1.53e-0946
regional part of cerebral cortex4.56e-0817
central nervous system1.23e-0773
ectoderm-derived structure2.83e-0795
ectoderm2.83e-0795
presumptive ectoderm2.83e-0795
occipital lobe6.68e-0710
visual cortex6.68e-0710
neocortex6.68e-0710
nervous system9.39e-0775


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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