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MCL coexpression mm9:59

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:106932319..106932352,+p@chr10:106932319..106932352
+
Mm9::chr10:127476464..127476477,+p@chr10:127476464..127476477
+
Mm9::chr11:116108512..116108530,-p@chr11:116108512..116108530
-
Mm9::chr11:118524835..118524836,-p@chr11:118524835..118524836
-
Mm9::chr11:61022236..61022249,+p1@Aldh3a1
Mm9::chr11:67015245..67015256,+p@chr11:67015245..67015256
+
Mm9::chr11:67051266..67051278,+p3@Myh4
Mm9::chr11:68956064..68956068,+p@chr11:68956064..68956068
+
Mm9::chr11:99146574..99146578,-p1@Krt24
Mm9::chr11:99620539..99620544,-p1@ENSMUST00000105061
Mm9::chr11:99676975..99676978,-p1@Gm11564
Mm9::chr11:99699383..99699387,-p1@2300003K06Rik
Mm9::chr11:99946757..99946762,-p4@Krt32
Mm9::chr11:99966952..99966959,-p1@Krt36
Mm9::chr11:99980147..99980157,-p6@Krt13
Mm9::chr11:99983018..99983025,-p5@Krt13
Mm9::chr11:99990613..99990619,+p@chr11:99990613..99990619
+
Mm9::chr12:31152256..31152266,-p2@2310016D03Rik
Mm9::chr12:57792498..57792515,+p2@Pax9
Mm9::chr12:57793900..57793908,-p@chr12:57793900..57793908
-
Mm9::chr12:57796615..57796687,+p1@Pax9
Mm9::chr13:83642532..83642542,-p@chr13:83642532..83642542
-
Mm9::chr13:99857857..99857881,-p1@2310020H05Rik
Mm9::chr14:100588795..100588806,-p@chr14:100588795..100588806
-
Mm9::chr14:31693434..31693443,+p@chr14:31693434..31693443
+
Mm9::chr14:60296379..60296423,-p@chr14:60296379..60296423
-
Mm9::chr15:101363250..101363255,-p1@Krt84
Mm9::chr15:101723347..101723352,-p1@Krt76
Mm9::chr15:101749231..101749250,-p@chr15:101749231..101749250
-
Mm9::chr15:101755156..101755173,-p1@Krt4
Mm9::chr15:73581208..73581213,+p@chr15:73581208..73581213
+
Mm9::chr16:18586986..18586991,-p@chr16:18586986..18586991
-
Mm9::chr16:18588291..18588301,-p2@Tbx1
Mm9::chr16:18588865..18588877,-p@chr16:18588865..18588877
-
Mm9::chr16:18588911..18588925,-p@chr16:18588911..18588925
-
Mm9::chr16:18588973..18589002,-p@chr16:18588973..18589002
-
Mm9::chr16:22918005..22918008,+p12@Fetub
Mm9::chr16:22918330..22918340,+p11@Fetub
Mm9::chr16:22918343..22918350,+p13@Fetub
Mm9::chr16:22918373..22918384,+p10@Fetub
Mm9::chr16:22918451..22918458,+p2@Fetub
Mm9::chr16:42166864..42166867,+p@chr16:42166864..42166867
+
Mm9::chr16:43974026..43974035,-p@chr16:43974026..43974035
-
Mm9::chr16:88507201..88507210,-p2@Cldn17
Mm9::chr16:88627903..88627912,-p1@2310079G19Rik
Mm9::chr16:88708206..88708210,-p1@2310061N02Rik
Mm9::chr16:88774446..88774451,-p1@2310057N15Rik
Mm9::chr16:88778074..88778080,+p1@ENSMUST00000009191
Mm9::chr16:93795080..93795090,-p2@ENSMUST00000165796
p2@uc007zzy.1
Mm9::chr16:93795127..93795163,-p1@ENSMUST00000165796
p1@uc007zzy.1
Mm9::chr16:94085162..94085179,+p3@Sim2
Mm9::chr16:94085471..94085495,+p1@Sim2
Mm9::chr16:95190807..95190837,+p@chr16:95190807..95190837
+
Mm9::chr16:95190906..95190911,+p@chr16:95190906..95190911
+
Mm9::chr17:15570276..15570286,-p@chr17:15570276..15570286
-
Mm9::chr17:15570293..15570301,-p@chr17:15570293..15570301
-
Mm9::chr17:24090258..24090267,+p@chr17:24090258..24090267
+
Mm9::chr17:24092235..24092269,-p1@Sbpl
Mm9::chr17:24092296..24092324,-p2@Sbpl
Mm9::chr17:26627860..26627863,-p@chr17:26627860..26627863
-
Mm9::chr17:67978952..67978962,+p@chr17:67978952..67978962
+
Mm9::chr17:71368623..71368636,+p6@Myom1
Mm9::chr17:71368673..71368685,+p7@Myom1
Mm9::chr18:20535224..20535241,+p2@Dsg1b
Mm9::chr18:60751437..60751521,-p1@Myoz3
Mm9::chr18:60751537..60751554,-p3@Myoz3
Mm9::chr18:62755974..62755980,-p1@Spink7
Mm9::chr18:70404027..70404032,-p@chr18:70404027..70404032
-
Mm9::chr18:70404043..70404049,-p6@2310002L13Rik
Mm9::chr18:70404072..70404082,-p3@2310002L13Rik
Mm9::chr18:70404134..70404150,-p5@2310002L13Rik
Mm9::chr18:70404214..70404219,-p4@2310002L13Rik
Mm9::chr18:70404244..70404255,-p1@2310002L13Rik
Mm9::chr18:70404339..70404350,-p2@2310002L13Rik
Mm9::chr18:70435860..70435867,-p@chr18:70435860..70435867
-
Mm9::chr18:76271498..76271508,+p@chr18:76271498..76271508
+
Mm9::chr18:77255320..77255331,-p@chr18:77255320..77255331
-
Mm9::chr18:79257793..79257798,-p@chr18:79257793..79257798
-
Mm9::chr19:34035639..34035644,+p4@Lipf
Mm9::chr19:34035674..34035677,+p3@Lipf
Mm9::chr19:34035685..34035700,+p2@Lipf
Mm9::chr19:34035704..34035745,+p1@Lipf
Mm9::chr19:34039030..34039042,+p@chr19:34039030..34039042
+
Mm9::chr19:34039335..34039345,+p@chr19:34039335..34039345
+
Mm9::chr19:34041399..34041412,-p@chr19:34041399..34041412
-
Mm9::chr19:34043253..34043264,+p@chr19:34043253..34043264
+
Mm9::chr19:34045246..34045251,+p@chr19:34045246..34045251
+
Mm9::chr19:34045260..34045268,+p@chr19:34045260..34045268
+
Mm9::chr19:34045308..34045320,+p@chr19:34045308..34045320
+
Mm9::chr19:34047510..34047556,+p@chr19:34047510..34047556
+
Mm9::chr19:34050959..34050968,+p@chr19:34050959..34050968
+
Mm9::chr19:34051208..34051222,+p@chr19:34051208..34051222
+
Mm9::chr19:46686975..46686984,+p@chr19:46686975..46686984
+
Mm9::chr19:57229904..57229951,-p@chr19:57229904..57229951
-
Mm9::chr1:108831018..108831041,+p1@Serpinb12
Mm9::chr1:108831079..108831101,+p3@Serpinb12
Mm9::chr1:108831107..108831117,+p5@Serpinb12
Mm9::chr1:108948908..108948922,-p1@Serpinb3a
Mm9::chr1:110269682..110269688,+p@chr1:110269682..110269688
+
Mm9::chr1:153097354..153097357,-p@chr1:153097354..153097357
-
Mm9::chr1:153097852..153097857,-p@chr1:153097852..153097857
-
Mm9::chr1:153097871..153097884,-p@chr1:153097871..153097884
-
Mm9::chr1:153097917..153097931,-p@chr1:153097917..153097931
-
Mm9::chr1:153097937..153097967,-p@chr1:153097937..153097967
-
Mm9::chr1:16804330..16804337,+p@chr1:16804330..16804337
+
Mm9::chr1:16804378..16804385,+p@chr1:16804378..16804385
+
Mm9::chr1:168611973..168611978,-p1@Fmo9
Mm9::chr1:179573263..179573279,-p2@2310043L19Rik
Mm9::chr1:189743167..189743185,+p@chr1:189743167..189743185
+
Mm9::chr1:36155397..36155406,-p@chr1:36155397..36155406
-
Mm9::chr1:38014602..38014605,-p1@Lyg1
Mm9::chr1:52741574..52741579,+p@chr1:52741574..52741579
+
Mm9::chr1:55853220..55853269,+p@chr1:55853220..55853269
+
Mm9::chr2:120942174..120942183,-p@chr2:120942174..120942183
-
Mm9::chr2:120942190..120942201,-p@chr2:120942190..120942201
-
Mm9::chr2:129838072..129838086,+p1@Tgm3
Mm9::chr2:129864186..129864212,+p@chr2:129864186..129864212
+
Mm9::chr2:129870352..129870357,+p@chr2:129870352..129870357
+
Mm9::chr2:129874079..129874084,-p@chr2:129874079..129874084
-
Mm9::chr2:129874269..129874286,-p@chr2:129874269..129874286
-
Mm9::chr2:129874280..129874305,+p@chr2:129874280..129874305
+
Mm9::chr2:129874324..129874335,-p@chr2:129874324..129874335
-
Mm9::chr2:153700714..153700723,+p2@Bpifb2
Mm9::chr2:153700801..153700813,+p1@Bpifb2
Mm9::chr2:153988342..153988349,+p1@Bpifa5
Mm9::chr2:154026044..154026056,+p6@Bpifb1
Mm9::chr2:154026059..154026070,+p8@Bpifb1
Mm9::chr2:154026088..154026101,+p5@Bpifb1
Mm9::chr2:154026107..154026121,+p2@Bpifb1
Mm9::chr2:154028303..154028316,+p@chr2:154028303..154028316
+
Mm9::chr2:154028356..154028365,+p@chr2:154028356..154028365
+
Mm9::chr2:154028402..154028426,+p@chr2:154028402..154028426
+
Mm9::chr2:154028426..154028468,-p@chr2:154028426..154028468
-
Mm9::chr2:154030430..154030445,+p@chr2:154030430..154030445
+
Mm9::chr2:154030456..154030466,+p@chr2:154030456..154030466
+
Mm9::chr2:154030489..154030505,+p@chr2:154030489..154030505
+
Mm9::chr2:154030513..154030522,+p@chr2:154030513..154030522
+
Mm9::chr2:154031152..154031174,+p@chr2:154031152..154031174
+
Mm9::chr2:154031197..154031211,-p@chr2:154031197..154031211
-
Mm9::chr2:154031214..154031231,+p@chr2:154031214..154031231
+
Mm9::chr2:154032166..154032169,+p@chr2:154032166..154032169
+
Mm9::chr2:154032171..154032193,-p@chr2:154032171..154032193
-
Mm9::chr2:154032184..154032194,+p@chr2:154032184..154032194
+
Mm9::chr2:154032201..154032233,+p@chr2:154032201..154032233
+
Mm9::chr2:154032211..154032221,-p@chr2:154032211..154032221
-
Mm9::chr2:154032235..154032241,+p@chr2:154032235..154032241
+
Mm9::chr2:154032255..154032261,+p@chr2:154032255..154032261
+
Mm9::chr2:154032873..154032882,+p@chr2:154032873..154032882
+
Mm9::chr2:154032892..154032907,-p@chr2:154032892..154032907
-
Mm9::chr2:154037257..154037270,-p@chr2:154037257..154037270
-
Mm9::chr2:154037257..154037273,+p@chr2:154037257..154037273
+
Mm9::chr2:154038734..154038745,+p@chr2:154038734..154038745
+
Mm9::chr2:154038743..154038767,-p@chr2:154038743..154038767
-
Mm9::chr2:154038774..154038797,+p@chr2:154038774..154038797
+
Mm9::chr2:154039743..154039754,+p@chr2:154039743..154039754
+
Mm9::chr2:154039757..154039790,+p@chr2:154039757..154039790
+
Mm9::chr2:154039800..154039811,+p@chr2:154039800..154039811
+
Mm9::chr2:154039828..154039854,+p@chr2:154039828..154039854
+
Mm9::chr2:154040994..154041006,+p@chr2:154040994..154041006
+
Mm9::chr2:154041029..154041049,-p@chr2:154041029..154041049
-
Mm9::chr2:154042903..154042945,+p@chr2:154042903..154042945
+
Mm9::chr2:154045916..154045946,+p@chr2:154045916..154045946
+
Mm9::chr2:154045946..154045966,-p@chr2:154045946..154045966
-
Mm9::chr2:164008328..164008348,-p4@Wfdc5
Mm9::chr2:164008403..164008422,-p2@Wfdc5
Mm9::chr2:164008449..164008456,-p6@Wfdc5
Mm9::chr2:180126739..180126742,+p@chr2:180126739..180126742
+
Mm9::chr2:52061738..52061746,-p@chr2:52061738..52061746
-
Mm9::chr2:60560588..60560599,-p10@Itgb6
Mm9::chr2:71913136..71913144,-p@chr2:71913136..71913144
-
Mm9::chr2:84662683..84662699,-p2@Smtnl1
Mm9::chr3:113280651..113280658,-p7@Amy1
Mm9::chr3:30690822..30690825,+p@chr3:30690822..30690825
+
Mm9::chr3:92338424..92338441,-p@chr3:92338424..92338441
-
Mm9::chr3:93197618..93197621,+p1@Rptn
Mm9::chr4:124380960..124380970,+p@chr4:124380960..124380970
+
Mm9::chr4:124380981..124380984,+p@chr4:124380981..124380984
+
Mm9::chr4:132626792..132626797,-p@chr4:132626792..132626797
-
Mm9::chr4:132626809..132626820,-p@chr4:132626809..132626820
-
Mm9::chr4:32400050..32400057,+p@chr4:32400050..32400057
+
Mm9::chr5:121977233..121977267,-p8@Mapkapk5
Mm9::chr5:121977269..121977278,-p16@Mapkapk5
Mm9::chr5:64359159..64359160,+p@chr5:64359159..64359160
+
Mm9::chr5:76792812..76792816,-p1@Nmu
Mm9::chr5:86898080..86898087,-p3@Tmprss11a
Mm9::chr5:88398480..88398486,+p1@2310003L06Rik
Mm9::chr5:91456483..91456518,+p1@Epgn
Mm9::chr6:125640633..125640642,+p3@Ano2
Mm9::chr6:132314147..132314153,-p1@Gm4736
p1@Gm8882
Mm9::chr6:132389732..132389736,-p@chr6:132389732..132389736
-
Mm9::chr6:132389759..132389787,-p@chr6:132389759..132389787
-
Mm9::chr6:41810304..41810307,+p1@Sval2
Mm9::chr6:93765798..93765806,-p@chr6:93765798..93765806
-
Mm9::chr7:149024970..149024987,+p1@Muc5b
Mm9::chr7:149030648..149030693,+p@chr7:149030648..149030693
+
Mm9::chr7:149031277..149031282,+p@chr7:149031277..149031282
+
Mm9::chr7:149050564..149050574,+p@chr7:149050564..149050574
+
Mm9::chr7:31027882..31027890,-p2@Wdr62
Mm9::chr7:31027894..31027901,-p3@Wdr62
Mm9::chr7:31028518..31028554,-p@chr7:31028518..31028554
-
Mm9::chr7:31339960..31339971,+p@chr7:31339960..31339971
+
Mm9::chr7:4915935..4915967,-p1@Sbk2
Mm9::chr7:4915970..4915988,-p3@Sbk2
Mm9::chr7:4915997..4916013,-p2@Sbk2
Mm9::chr7:51038197..51038202,+p@chr7:51038197..51038202
+
Mm9::chr7:51270656..51270681,+p@chr7:51270656..51270681
+
Mm9::chr8:112138317..112138321,+p2@Pkd1l3
Mm9::chr8:15057149..15057160,+p9@Myom2
Mm9::chr8:19197144..19197150,-p@chr8:19197144..19197150
-
Mm9::chr8:19198702..19198706,+p1@Defb4
Mm9::chr8:27934890..27934902,-p@chr8:27934890..27934902
-
Mm9::chr8:74245929..74245933,-p10@Fcho1
Mm9::chr8:95903645..95903655,-p1@Ces1h
Mm9::chr8:95903662..95903669,-p2@Ces1h
Mm9::chr8:95903671..95903681,-p3@Ces1h
Mm9::chr8:95903716..95903724,-p4@Ces1h
Mm9::chr8:96661097..96661113,+p1@Mt4
Mm9::chr9:109871536..109871541,+p@chr9:109871536..109871541
+
Mm9::chr9:112129931..112129946,+p1@ENSMUST00000161216
Mm9::chr9:112129947..112129965,+p2@ENSMUST00000161216
Mm9::chr9:53698050..53698064,+p1@Sln
Mm9::chr9:62513835..62513850,-p@chr9:62513835..62513850
-
Mm9::chr9:62513853..62513869,-p@chr9:62513853..62513869
-
Mm9::chr9:62513870..62513876,-p@chr9:62513870..62513876
-
Mm9::chr9:62513877..62513884,-p@chr9:62513877..62513884
-
Mm9::chr9:62513888..62513895,-p@chr9:62513888..62513895
-
Mm9::chrX:154140506..154140517,+p8@Smpx
Mm9::chrX:160707431..160707454,+p3@Pir
Mm9::chrX:54040978..54040989,+p18@Fhl1
Mm9::chrX:70934920..70934962,-p@chrX:70934920..70934962
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005200structural constituent of cytoskeleton7.3737477811178e-07
GO:0006941striated muscle contraction1.50004141068602e-06
GO:0005882intermediate filament1.50004141068602e-06
GO:0045111intermediate filament cytoskeleton1.50004141068602e-06
GO:0032982myosin filament1.50004141068602e-06
GO:0005863striated muscle thick filament1.50004141068602e-06
GO:0005859muscle myosin complex1.79681521810723e-06
GO:0044430cytoskeletal part1.89200161475689e-06
GO:0003012muscle system process2.06482693906102e-06
GO:0006936muscle contraction2.06482693906102e-06
GO:0016460myosin II complex2.07149551644975e-06
GO:0005856cytoskeleton3.01869986238872e-06
GO:0030017sarcomere1.76742392364845e-05
GO:0044449contractile fiber part2.05255791304866e-05
GO:0030016myofibril2.90995652226637e-05
GO:0043292contractile fiber3.11160074081959e-05
GO:0016459myosin complex0.000270248118320049
GO:0043232intracellular non-membrane-bound organelle0.000714526775871007
GO:0043228non-membrane-bound organelle0.000714526775871007
GO:0007010cytoskeleton organization and biogenesis0.00203011709043385
GO:0001533cornified envelope0.0207526420902453
GO:0015629actin cytoskeleton0.0219114963585475
GO:0050678regulation of epithelial cell proliferation0.0273525588712536
GO:0060023soft palate development0.0376439700112521
GO:0042922neuromedin U receptor binding0.0376439700112521
GO:0005155epidermal growth factor receptor activating ligand activity0.0376439700112521
GO:0050673epithelial cell proliferation0.0388280783388025



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
tongue3.06e-231
gustatory system3.06e-231
future tongue3.06e-231
mouth2.42e-122
oral opening2.42e-122
stomodeum2.42e-122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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