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MCL coexpression mm9:339

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:77512581..77512592,+p3@Dnmt3l
Mm9::chr10:77512605..77512612,+p7@Dnmt3l
Mm9::chr12:3871355..3871364,+p@chr12:3871355..3871364
+
Mm9::chr13:47139250..47139274,+p@chr13:47139250..47139274
+
Mm9::chr15:13062678..13062684,-p@chr15:13062678..13062684
-
Mm9::chr15:97929103..97929108,-p@chr15:97929103..97929108
-
Mm9::chr16:48431443..48431452,+p2@Morc1
Mm9::chr19:46745201..46745211,-p@chr19:46745201..46745211
-
Mm9::chr2:169058730..169058732,-p@chr2:169058730..169058732
-
Mm9::chr3:136950856..136950861,+p@chr3:136950856..136950861
+
Mm9::chr4:129606011..129606014,+p@chr4:129606011..129606014
+
Mm9::chr4:129606033..129606044,+p@chr4:129606033..129606044
+
Mm9::chr7:12573893..12573904,-p@chr7:12573893..12573904
-
Mm9::chr7:12573906..12573931,-p@chr7:12573906..12573931
-
Mm9::chr7:50683014..50683022,+p4@Lim2
Mm9::chr7:50683034..50683049,+p3@Lim2
Mm9::chr8:73125228..73125269,-p@chr8:73125228..73125269
-
Mm9::chr8:74241107..74241116,-p@chr8:74241107..74241116
-
Mm9::chr9:14545062..14545068,-p7@Piwil4
Mm9::chr9:14545086..14545097,-p4@Piwil4
Mm9::chr9:14545110..14545121,-p1@Piwil4
Mm9::chr9:14545135..14545140,-p6@Piwil4
Mm9::chr9:55139944..55139951,-p@chr9:55139944..55139951
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0007275multicellular organismal development0.021161115316747
GO:0032502developmental process0.021161115316747
GO:0021937Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation0.021161115316747
GO:0021692cerebellar Purkinje cell layer morphogenesis0.021161115316747
GO:0021940positive regulation of granule cell precursor proliferation0.021161115316747
GO:0021694cerebellar Purkinje cell layer formation0.021161115316747
GO:0021936regulation of granule cell precursor proliferation0.021161115316747
GO:0021702cerebellar Purkinje cell differentiation0.021161115316747
GO:0021534cell proliferation in hindbrain0.021161115316747
GO:0021930granule cell precursor proliferation0.021161115316747
GO:0021924cell proliferation in the external granule layer0.021161115316747
GO:0032501multicellular organismal process0.021161115316747
GO:0021697cerebellar cortex formation0.021161115316747
GO:0021533cell differentiation in hindbrain0.021161115316747
GO:0021680cerebellar Purkinje cell layer development0.0233375147164997
GO:0021696cerebellar cortex morphogenesis0.0235599773010943
GO:0021587cerebellum morphogenesis0.0237560075770642
GO:0021575hindbrain morphogenesis0.0239300109561331
GO:0008270zinc ion binding0.0242251532587318
GO:0021695cerebellar cortex development0.0242251532587318
GO:0005720nuclear heterochromatin0.0269057763554648
GO:0022037metencephalon development0.0269057763554648
GO:0021549cerebellum development0.0269057763554648
GO:0000794condensed nuclear chromosome0.0313771730989331
GO:0000790nuclear chromatin0.0332211727732593
GO:0046914transition metal ion binding0.0332211727732593
GO:0000792heterochromatin0.0358360502863889
GO:0030902hindbrain development0.0402956744087905
GO:0000793condensed chromosome0.0407521414766671



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
testis1.21e-4914
male reproductive organ2.35e-4615
male organism1.78e-4316
male reproductive system1.78e-4316
external genitalia6.20e-4117
indifferent external genitalia6.20e-4117
indifferent gonad6.20e-4117
gonad1.13e-3818
gonad primordium1.13e-3818
reproductive organ4.66e-2924
reproductive structure7.77e-2726
reproductive system7.77e-2726
body cavity6.84e-1937
body cavity or lining6.84e-1937
body cavity precursor2.14e-1838
anatomical cavity6.32e-1839
anatomical space2.88e-1257
immaterial anatomical entity7.96e-0979


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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