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MCL coexpression mm9:2232

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Phase1 CAGE Peaks

 Short description
Mm9::chr18:16849044..16849057,-p@chr18:16849044..16849057
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Mm9::chr18:16923314..16923318,-p@chr18:16923314..16923318
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Mm9::chr18:16924791..16924794,-p@chr18:16924791..16924794
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Mm9::chr1:170362437..170362478,-p5@Pbx1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
electrically responsive cell4.25e-0739
electrically active cell4.25e-0739

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest1.53e-2392
tube1.42e-22114
anatomical conduit1.74e-19122
neurectoderm5.30e-1464
neural plate5.30e-1464
presumptive neural plate5.30e-1464
epithelial tube8.98e-1447
pre-chordal neural plate3.81e-1249
primary circulatory organ1.06e-1118
heart1.06e-1118
primitive heart tube1.06e-1118
primary heart field1.06e-1118
anterior lateral plate mesoderm1.06e-1118
heart tube1.06e-1118
heart primordium1.06e-1118
cardiac mesoderm1.06e-1118
cardiogenic plate1.06e-1118
heart rudiment1.06e-1118
ecto-epithelium1.65e-1173
central nervous system1.96e-1173
ectoderm-derived structure2.70e-1195
ectoderm2.70e-1195
presumptive ectoderm2.70e-1195
nervous system4.04e-1175
cardiovascular system1.31e-0923
circulatory system1.31e-0923
regional part of nervous system1.47e-0954
multi-cellular organism1.54e-09333
brain2.54e-0947
future brain2.54e-0947
neural tube2.95e-0952
neural rod2.95e-0952
future spinal cord2.95e-0952
neural keel2.95e-0952
regional part of brain5.97e-0946
anterior neural tube6.85e-0940
regional part of forebrain1.83e-0839
forebrain1.83e-0839
future forebrain1.83e-0839
epithelium8.89e-08174
brain grey matter1.86e-0729
regional part of telencephalon1.86e-0729
telencephalon1.86e-0729
gray matter1.96e-0734
cell layer2.10e-07176
embryo2.59e-07320


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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