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MCL coexpression mm9:1425

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Phase1 CAGE Peaks

 Short description
Mm9::chr1:173934582..173934589,-p@chr1:173934582..173934589
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Mm9::chr1:173934659..173934666,-p@chr1:173934659..173934666
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Mm9::chr1:173934671..173934684,-p@chr1:173934671..173934684
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Mm9::chr1:173957382..173957399,-p2@Vangl2
Mm9::chr1:173957400..173957444,-p1@Vangl2
Mm9::chr1:173987720..173987729,-p1@Nhlh1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0035058sensory cilium biogenesis0.0137063192827999
GO:0007164establishment of tissue polarity0.0137063192827999
GO:0001736establishment of planar polarity0.0137063192827999
GO:0045197establishment and/or maintenance of epithelial cell polarity0.0137063192827999
GO:0045176apical protein localization0.0137063192827999
GO:0008105asymmetric protein localization0.0137063192827999
GO:0035088establishment and/or maintenance of apical/basal cell polarity0.0137063192827999
GO:0001738morphogenesis of a polarized epithelium0.0137063192827999
GO:0042384cilium biogenesis0.0139543778698986
GO:0001947heart looping0.0139543778698986
GO:0007163establishment and/or maintenance of cell polarity0.0217411228203974
GO:0003007heart morphogenesis0.0282255244932613
GO:0001843neural tube closure0.028373652194394
GO:0014020primary neural tube formation0.028373652194394
GO:0030031cell projection biogenesis0.028373652194394
GO:0016324apical plasma membrane0.028373652194394
GO:0001841neural tube formation0.028373652194394
GO:0001839neural plate morphogenesis0.028373652194394
GO:0001840neural plate development0.028373652194394
GO:0001838embryonic epithelial tube formation0.028373652194394
GO:0021915neural tube development0.0308083974695856
GO:0016331morphogenesis of embryonic epithelium0.0330202130454143
GO:0045177apical part of cell0.0333115541741164
GO:0002009morphogenesis of an epithelium0.0495929248956148
GO:0007275multicellular organismal development0.0495929248956148



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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