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MCL coexpression mm9:1323

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Phase1 CAGE Peaks

 Short description
Mm9::chr12:34642682..34642753,+p2@Twist1
Mm9::chr19:5068077..5068085,+p3@Cd248
Mm9::chr19:5068087..5068098,+p2@Cd248
Mm9::chr19:5068101..5068115,+p1@Cd248
Mm9::chr19:5068117..5068122,+p4@Cd248
Mm9::chr19:5069431..5069446,+p@chr19:5069431..5069446
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0045843negative regulation of striated muscle development0.0427163126445435
GO:0035115embryonic forelimb morphogenesis0.0427163126445435
GO:0016202regulation of striated muscle development0.0427163126445435
GO:0035136forelimb morphogenesis0.0427163126445435
GO:0035137hindlimb morphogenesis0.0449155998709496
GO:0001843neural tube closure0.0449155998709496
GO:0014020primary neural tube formation0.0449155998709496
GO:0001841neural tube formation0.0449155998709496
GO:0001839neural plate morphogenesis0.0449155998709496
GO:0001764neuron migration0.0449155998709496
GO:0001840neural plate development0.0449155998709496
GO:0001838embryonic epithelial tube formation0.0449155998709496
GO:0030326embryonic limb morphogenesis0.0449155998709496
GO:0035113embryonic appendage morphogenesis0.0449155998709496
GO:0021915neural tube development0.0449155998709496
GO:0016331morphogenesis of embryonic epithelium0.0449155998709496
GO:0035107appendage morphogenesis0.0449155998709496
GO:0035108limb morphogenesis0.0449155998709496
GO:0048736appendage development0.0449155998709496
GO:0060173limb development0.0449155998709496
GO:0045596negative regulation of cell differentiation0.0460180485381822



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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