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MCL coexpression mm9:64

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:112368477..112368482,+p1@ENSMUST00000082773
Mm9::chr10:127522566..127522584,+p7@Atp5b
Mm9::chr10:34108616..34108620,-p@chr10:34108616..34108620
-
Mm9::chr10:39978269..39978276,+p1@ENSMUST00000083936
Mm9::chr10:40003825..40003830,+p@chr10:40003825..40003830
+
Mm9::chr10:49972787..49972789,+p@chr10:49972787..49972789
+
Mm9::chr10:68682105..68682130,+p17@Rhobtb1
Mm9::chr10:77856043..77856053,+p2@Gm10146
p2@LOC100505147
p2@Lsm7
Mm9::chr10:82418093..82418118,-p@chr10:82418093..82418118
-
Mm9::chr10:87801413..87801426,-p@chr10:87801413..87801426
-
Mm9::chr11:100184357..100184363,-p@chr11:100184357..100184363
-
Mm9::chr11:102331153..102331180,-p2@Itga2b
Mm9::chr11:115158932..115158945,-p3@Fads6
Mm9::chr11:11601645..11601647,+p@chr11:11601645..11601647
+
Mm9::chr11:120440514..120440527,-p@chr11:120440514..120440527
-
Mm9::chr11:120624106..120624107,+p13@Hmga1-rs1
p14@Hmga1
Mm9::chr11:40498465..40498469,-p6@Mat2b
Mm9::chr11:4537722..4537729,+p2@Ascc2
Mm9::chr11:51420508..51420543,+p@chr11:51420508..51420543
+
Mm9::chr11:59661738..59661759,-p@chr11:59661738..59661759
-
Mm9::chr11:6073067..6073069,-p1@ENSMUST00000117476
Mm9::chr11:69482493..69482498,-p1@ENSMUST00000158917
Mm9::chr11:69810746..69810760,-p@chr11:69810746..69810760
-
Mm9::chr11:70453721..70453748,+p@chr11:70453721..70453748
+
Mm9::chr11:72695293..72695294,+p1@ENSMUST00000083364
Mm9::chr12:104098510..104098512,-p@chr12:104098510..104098512
-
Mm9::chr12:44561152..44561157,+p@chr12:44561152..44561157
+
Mm9::chr12:50942809..50942811,-p@chr12:50942809..50942811
-
Mm9::chr12:68053211..68053223,+p@chr12:68053211..68053223
+
Mm9::chr13:106689021..106689037,+p@chr13:106689021..106689037
+
Mm9::chr13:21272819..21272822,+p@chr13:21272819..21272822
+
Mm9::chr13:61029443..61029449,+p1@ENSMUST00000122502
Mm9::chr14:110639136..110639141,+p@chr14:110639136..110639141
+
Mm9::chr14:122679237..122679247,+p@chr14:122679237..122679247
+
Mm9::chr14:20110704..20110713,-p@chr14:20110704..20110713
-
Mm9::chr14:21613477..21613497,+p2@uc007skw.1
Mm9::chr14:22667688..22667709,+p1@ENSMUST00000169054
Mm9::chr14:35316410..35316417,-p11@Bmpr1a
Mm9::chr14:66456275..66456278,+p3@Ccdc25
Mm9::chr14:67332471..67332484,-p@chr14:67332471..67332484
-
Mm9::chr15:22968603..22968607,+p@chr15:22968603..22968607
+
Mm9::chr15:30562737..30562740,+p@chr15:30562737..30562740
+
Mm9::chr15:32605415..32605418,+p@chr15:32605415..32605418
+
Mm9::chr15:76079406..76079418,+p@chr15:76079406..76079418
+
Mm9::chr15:76528445..76528455,-p@chr15:76528445..76528455
-
Mm9::chr16:18289279..18289289,-p2@Dgcr8
Mm9::chr16:18533424..18533434,-p@chr16:18533424..18533434
-
Mm9::chr16:20426448..20426459,-p4@Abcc5
Mm9::chr16:25022070..25022081,+p@chr16:25022070..25022081
+
Mm9::chr16:29150255..29150267,+p@chr16:29150255..29150267
+
Mm9::chr16:35235006..35235012,-p1@ENSMUST00000122632
Mm9::chr16:39119601..39119604,+p@chr16:39119601..39119604
+
Mm9::chr16:55940845..55940848,-p@chr16:55940845..55940848
-
Mm9::chr16:67648813..67648819,+p@chr16:67648813..67648819
+
Mm9::chr16:98218137..98218155,-p@chr16:98218137..98218155
-
Mm9::chr17:20414261..20414262,+p@chr17:20414261..20414262
+
Mm9::chr17:23837148..23837168,-p@chr17:23837148..23837168
-
Mm9::chr17:27693558..27693580,+p1@Hmga1-rs1
p1@Hmga1
Mm9::chr17:27760765..27760776,-p8@Nudt3
Mm9::chr17:28740504..28740506,-p@chr17:28740504..28740506
-
Mm9::chr17:28828407..28828416,+p3@Mapk14
Mm9::chr17:35379647..35379653,-p@chr17:35379647..35379653
-
Mm9::chr17:36034271..36034276,-p6@2310061I04Rik
Mm9::chr17:39638914..39638920,+p@chr17:39638914..39638920
+
Mm9::chr17:46995166..46995201,+p@chr17:46995166..46995201
+
Mm9::chr17:57018060..57018063,+p@chr17:57018060..57018063
+
Mm9::chr17:74927736..74927741,+p5@Birc6
Mm9::chr17:82810237..82810240,-p@chr17:82810237..82810240
-
Mm9::chr17:84389812..84389820,-p@chr17:84389812..84389820
-
Mm9::chr17:88072670..88072680,+p@chr17:88072670..88072680
+
Mm9::chr17:92708555..92708571,+p@chr17:92708555..92708571
+
Mm9::chr18:10151138..10151141,-p1@ENSMUST00000084007
Mm9::chr18:24103423..24103455,+p1@ENSMUST00000167150
Mm9::chr18:29493068..29493080,+p@chr18:29493068..29493080
+
Mm9::chr18:37346349..37346350,+p@chr18:37346349..37346350
+
Mm9::chr18:38034201..38034204,+p@chr18:38034201..38034204
+
Mm9::chr18:4396773..4396779,+p@chr18:4396773..4396779
+
Mm9::chr18:60661402..60661426,-p5@2010002N04Rik
Mm9::chr18:68851704..68851716,+p@chr18:68851704..68851716
+
Mm9::chr18:80452764..80452780,-p@chr18:80452764..80452780
-
Mm9::chr19:24265967..24265971,-p@chr19:24265967..24265971
-
Mm9::chr19:28086230..28086240,+p@chr19:28086230..28086240
+
Mm9::chr19:31200587..31200596,-p@chr19:31200587..31200596
-
Mm9::chr19:32337603..32337605,+p@chr19:32337603..32337605
+
Mm9::chr19:4195028..4195057,+p@chr19:4195028..4195057
+
Mm9::chr19:56005954..56005970,+p@chr19:56005954..56005970
+
Mm9::chr1:10220852..10220856,-p@chr1:10220852..10220856
-
Mm9::chr1:133424478..133424488,+p3@Fam72a
Mm9::chr1:138686149..138686150,-p@chr1:138686149..138686150
-
Mm9::chr1:140810234..140810239,+p@chr1:140810234..140810239
+
Mm9::chr1:173044076..173044085,-p@chr1:173044076..173044085
-
Mm9::chr1:186898054..186898056,-p@chr1:186898054..186898056
-
Mm9::chr1:26213112..26213117,+p@chr1:26213112..26213117
+
Mm9::chr1:57789806..57789824,+p@chr1:57789806..57789824
+
Mm9::chr1:95341999..95342013,-p@chr1:95341999..95342013
-
Mm9::chr2:103601320..103601329,-p2@Nat10
Mm9::chr2:116983326..116983346,+p@chr2:116983326..116983346
+
Mm9::chr2:118489458..118489498,+p3@Pak6
Mm9::chr2:125664179..125664199,+p@chr2:125664179..125664199
+
Mm9::chr2:129024917..129024933,-p@chr2:129024917..129024933
-
Mm9::chr2:136635080..136635086,+p@chr2:136635080..136635086
+
Mm9::chr2:155455102..155455121,+p@chr2:155455102..155455121
+
Mm9::chr2:179991810..179991823,-p@chr2:179991810..179991823
-
Mm9::chr2:28332603..28332613,+p1@ENSMUST00000120702
Mm9::chr2:28980721..28980732,+p9@Setx
Mm9::chr2:29642770..29642774,-p@chr2:29642770..29642774
-
Mm9::chr2:31859846..31859894,+p@chr2:31859846..31859894
+
Mm9::chr2:50091439..50091440,+p@chr2:50091439..50091440
+
Mm9::chr2:51928415..51928426,+p4@Rif1
Mm9::chr2:61585596..61585615,-p@chr2:61585596..61585615
-
Mm9::chr2:69637744..69637745,-p1@ENSMUST00000120263
Mm9::chr2:69660082..69660091,+p8@Klhl23
Mm9::chr2:71711403..71711406,+p3@Pdk1
Mm9::chr2:84667236..84667255,+p2@Timm10
Mm9::chr3:104442352..104442365,-p@chr3:104442352..104442365
-
Mm9::chr3:129534292..129534324,-p3@Gar1
Mm9::chr3:132973052..132973055,+p3@Ppa2
Mm9::chr3:138421086..138421101,+p@chr3:138421086..138421101
+
Mm9::chr3:18077630..18077636,-p1@ENSMUST00000082660
Mm9::chr3:37264373..37264374,+p@chr3:37264373..37264374
+
Mm9::chr3:40549243..40549246,+p7@Hspa4l
Mm9::chr3:4093865..4093874,+p@chr3:4093865..4093874
+
Mm9::chr3:46898143..46898161,+p@chr3:46898143..46898161
+
Mm9::chr3:58329815..58329819,-p5@Serp1
Mm9::chr4:106595836..106595881,+p3@Ssbp3
Mm9::chr4:116692045..116692057,+p2@Eif2b3
Mm9::chr4:132925617..132925624,+p3@Slc9a1
Mm9::chr4:135415115..135415120,+p@chr4:135415115..135415120
+
Mm9::chr4:140256517..140256528,+p7@Rcc2
Mm9::chr4:149653329..149653337,+p@chr4:149653329..149653337
+
Mm9::chr4:151401710..151401733,-p2@Zbtb48
Mm9::chr4:18120667..18120669,+p1@ENSMUST00000120806
Mm9::chr4:30722097..30722099,+p@chr4:30722097..30722099
+
Mm9::chr4:47956622..47956628,+p@chr4:47956622..47956628
+
Mm9::chr4:94270212..94270229,+p@chr4:94270212..94270229
+
Mm9::chr5:109986818..109986824,-p@chr5:109986818..109986824
-
Mm9::chr5:118477802..118477809,+p2@Tesc
Mm9::chr5:121933793..121933805,+p@chr5:121933793..121933805
+
Mm9::chr5:130363158..130363175,-p2@Chchd2
p2@Gm12350
p2@Gm13202
p2@LOC100045688
Mm9::chr5:133549178..133549181,+p@chr5:133549178..133549181
+
Mm9::chr5:136720718..136720729,-p4@Sh2b2
Mm9::chr5:136720801..136720819,-p2@Sh2b2
Mm9::chr5:138110799..138110803,-p@chr5:138110799..138110803
-
Mm9::chr5:138228870..138228889,-p@chr5:138228870..138228889
-
Mm9::chr5:144493502..144493512,+p@chr5:144493502..144493512
+
Mm9::chr5:32048977..32048981,+p@chr5:32048977..32048981
+
Mm9::chr5:38937693..38937699,+p1@ENSMUST00000082485
Mm9::chr5:43006434..43006437,+p@chr5:43006434..43006437
+
Mm9::chr5:60162434..60162435,+p@chr5:60162434..60162435
+
Mm9::chr5:64336856..64336857,+p@chr5:64336856..64336857
+
Mm9::chr5:6951726..6951734,+p@chr5:6951726..6951734
+
Mm9::chr5:75599747..75599751,+p@chr5:75599747..75599751
+
Mm9::chr6:109075510..109075511,+p@chr6:109075510..109075511
+
Mm9::chr6:113277013..113277025,+p5@Ogg1
Mm9::chr6:124915596..124915608,+p@chr6:124915596..124915608
+
Mm9::chr6:17712881..17712885,+p@chr6:17712881..17712885
+
Mm9::chr6:25613714..25613715,+p@chr6:25613714..25613715
+
Mm9::chr6:3151426..3151427,+p@chr6:3151426..3151427
+
Mm9::chr6:48239215..48239226,+p1@ENSMUST00000175147
Mm9::chr6:49493767..49493769,-p@chr6:49493767..49493769
-
Mm9::chr6:62588153..62588180,+p@chr6:62588153..62588180
+
Mm9::chr6:63863425..63863434,+p@chr6:63863425..63863434
+
Mm9::chr6:70918796..70918798,+p@chr6:70918796..70918798
+
Mm9::chr6:76582649..76582650,+p1@ENSMUST00000157475
Mm9::chr6:82676642..82676651,-p3@Hk2
Mm9::chr6:83928282..83928287,+p@chr6:83928282..83928287
+
Mm9::chr6:86284003..86284005,+p1@ENSMUST00000101207
Mm9::chr7:117147088..117147090,+p1@ENSMUST00000083455
Mm9::chr7:128850977..128850986,-p2@Usp31
Mm9::chr7:135020060..135020124,-p2@Zfp668
Mm9::chr7:13510788..13510804,+p@chr7:13510788..13510804
+
Mm9::chr7:147323458..147323492,+p2@Mtg1
Mm9::chr7:148513637..148513648,-p6@Deaf1
Mm9::chr7:26472656..26472667,+p@chr7:26472656..26472667
+
Mm9::chr7:46773478..46773487,+p@chr7:46773478..46773487
+
Mm9::chr7:82602216..82602228,+p@chr7:82602216..82602228
+
Mm9::chr7:85222503..85222504,+p@chr7:85222503..85222504
+
Mm9::chr7:86878223..86878231,-p@chr7:86878223..86878231
-
Mm9::chr7:87652663..87652667,+p1@ENSMUST00000166096
Mm9::chr8:109963485..109963493,-p2@LOC100046297
p2@Rps26
Mm9::chr8:114045973..114046012,-p1@Wdr59
Mm9::chr8:11715272..11715283,-p@chr8:11715272..11715283
-
Mm9::chr8:119445278..119445292,-p2@2310061C15Rik
Mm9::chr8:120443979..120443989,+p@chr8:120443979..120443989
+
Mm9::chr8:12672135..12672146,-p2@Tubgcp3
Mm9::chr8:127473462..127473466,+p@chr8:127473462..127473466
+
Mm9::chr8:130962229..130962233,-p@chr8:130962229..130962233
-
Mm9::chr8:41940449..41940456,-p@chr8:41940449..41940456
-
Mm9::chr8:59103982..59103988,-p@chr8:59103982..59103988
-
Mm9::chr8:70841610..70841616,+p@chr8:70841610..70841616
+
Mm9::chr8:72794143..72794161,+p@chr8:72794143..72794161
+
Mm9::chr8:85966323..85966335,-p4@LOC100505320
p4@Scoc
Mm9::chr8:87379572..87379574,-p@chr8:87379572..87379574
-
Mm9::chr9:100619820..100619824,+p@chr9:100619820..100619824
+
Mm9::chr9:106331717..106331728,+p5@Gm10913
p5@Gm13141
p5@Gm13841
p5@Gm6344
p5@Gm6887
p5@Gm8210
p5@Rpl29
Mm9::chr9:106331795..106331810,+p3@Gm10913
p3@Gm13141
p3@Gm13841
p3@Gm6344
p3@Gm6887
p3@Gm8210
p3@Rpl29
Mm9::chr9:107192178..107192197,-p4@Mapkapk3
Mm9::chr9:107877983..107877991,+p8@Uba7
Mm9::chr9:108839053..108839073,+p@chr9:108839053..108839073
+
Mm9::chr9:110183763..110183770,+p@chr9:110183763..110183770
+
Mm9::chr9:111787794..111787797,+p@chr9:111787794..111787797
+
Mm9::chr9:20879724..20879747,-p@chr9:20879724..20879747
-
Mm9::chr9:22193712..22193760,+p@chr9:22193712..22193760
+
Mm9::chr9:35018874..35018886,+p@chr9:35018874..35018886
+
Mm9::chr9:66366451..66366460,-p@chr9:66366451..66366460
-
Mm9::chr9:88421624..88421635,-p1@ENSMUST00000122754
Mm9::chr9:96667230..96667255,+p@chr9:96667230..96667255
+
Mm9::chr9:98231670..98231671,+p@chr9:98231670..98231671
+
Mm9::chrX:100867902..100867904,+p@chrX:100867902..100867904
+
Mm9::chrX:100868002..100868029,+p@chrX:100868002..100868029
+
Mm9::chrX:15503216..15503221,+p@chrX:15503216..15503221
+
Mm9::chrX:165625137..165625142,-p1@Amelx
Mm9::chrX:74756561..74756568,+p6@Tbl1x
Mm9::chrX:83021876..83021887,-p3@Gyk
Mm9::chrX:99384710..99384727,-p3@Rps4x


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006793phosphorus metabolic process0.00278044920095333
GO:0006796phosphate metabolic process0.00278044920095333
GO:0000166nucleotide binding0.00278044920095333
GO:0032555purine ribonucleotide binding0.00278044920095333
GO:0032553ribonucleotide binding0.00278044920095333
GO:0017076purine nucleotide binding0.00368169664019364
GO:0043283biopolymer metabolic process0.00716610501837858
GO:0016310phosphorylation0.00883445904346457
GO:0005524ATP binding0.0108904151118522
GO:0043687post-translational protein modification0.0108904151118522
GO:0032559adenyl ribonucleotide binding0.0108904151118522
GO:0030554adenyl nucleotide binding0.0157073919173566
GO:0000922spindle pole0.016627503658916
GO:0016773phosphotransferase activity, alcohol group as acceptor0.0272645472091043
GO:0043170macromolecule metabolic process0.0272645472091043
GO:0006464protein modification process0.0272645472091043
GO:0043412biopolymer modification0.0358960328264356
GO:0004674protein serine/threonine kinase activity0.0463960237421549
GO:0002260lymphocyte homeostasis0.0499635108981098
GO:0044237cellular metabolic process0.0499635108981098
GO:0006468protein amino acid phosphorylation0.0499635108981098



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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