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MCL coexpression mm9:170

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:128182501..128182522,-p@chr10:128182501..128182522
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Mm9::chr10:18732348..18732353,-p@chr10:18732348..18732353
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Mm9::chr10:18781687..18781698,-p@chr10:18781687..18781698
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Mm9::chr10:20955283..20955294,+p@chr10:20955283..20955294
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Mm9::chr10:3363575..3363598,+p@chr10:3363575..3363598
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Mm9::chr11:105894898..105894916,+p@chr11:105894898..105894916
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Mm9::chr11:32435982..32435997,+p@chr11:32435982..32435997
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Mm9::chr11:5442142..5442173,-p2@Ccdc117
Mm9::chr12:109416693..109416707,+p@chr12:109416693..109416707
+
Mm9::chr13:110693261..110693272,+p31@Pde4d
Mm9::chr13:110693297..110693318,+p6@Pde4d
Mm9::chr13:110693331..110693341,+p33@Pde4d
Mm9::chr14:30299781..30299783,+p@chr14:30299781..30299783
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Mm9::chr14:60796479..60796489,+p@chr14:60796479..60796489
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Mm9::chr14:79935403..79935414,+p@chr14:79935403..79935414
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Mm9::chr14:79935569..79935580,+p@chr14:79935569..79935580
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Mm9::chr15:59973174..59973208,-p@chr15:59973174..59973208
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Mm9::chr15:99871828..99871843,-p@chr15:99871828..99871843
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Mm9::chr16:91545956..91545967,+p@chr16:91545956..91545967
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Mm9::chr18:21121389..21121402,+p@chr18:21121389..21121402
+
Mm9::chr18:5594197..5594228,+p7@Zeb1
Mm9::chr18:56628893..56628932,+p2@Gramd3
Mm9::chr18:75527810..75527843,+p@chr18:75527810..75527843
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Mm9::chr19:46694450..46694460,-p@chr19:46694450..46694460
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Mm9::chr19:53258922..53258925,+p@chr19:53258922..53258925
+
Mm9::chr19:53495864..53495876,+p@chr19:53495864..53495876
+
Mm9::chr19:6400611..6400622,+p12@Rasgrp2
Mm9::chr1:185858332..185858352,+p1@Dusp10
Mm9::chr1:36364904..36364920,+p@chr1:36364904..36364920
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Mm9::chr1:44159186..44159189,-p5@1700029F09Rik
Mm9::chr1:61034784..61034801,+p2@Icos
Mm9::chr2:32023450..32023498,-p@chr2:32023450..32023498
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Mm9::chr2:59176806..59176817,+p@chr2:59176806..59176817
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Mm9::chr2:91022340..91022369,+p@chr2:91022340..91022369
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Mm9::chr3:130816799..130816810,+p@chr3:130816799..130816810
+
Mm9::chr3:51363691..51363703,+p2@5031434O11Rik
Mm9::chr3:87942813..87942826,+p@chr3:87942813..87942826
+
Mm9::chr4:102242670..102242729,+p5@Pde4b
Mm9::chr4:102242739..102242755,+p28@Pde4b
Mm9::chr4:106851921..106851931,-p14@2210012G02Rik
Mm9::chr4:153905378..153905379,+p@chr4:153905378..153905379
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Mm9::chr4:59344603..59344615,-p@chr4:59344603..59344615
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Mm9::chr4:59344643..59344658,-p@chr4:59344643..59344658
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Mm9::chr4:59344867..59344881,+p@chr4:59344867..59344881
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Mm9::chr4:8727359..8727384,+p@chr4:8727359..8727384
+
Mm9::chr5:114275427..114275442,-p@chr5:114275427..114275442
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Mm9::chr5:123439357..123439375,+p1@ENSMUST00000148466
p1@uc008zmw.1
Mm9::chr5:124456124..124456163,-p@chr5:124456124..124456163
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Mm9::chr5:124460721..124460727,-p@chr5:124460721..124460727
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Mm9::chr5:124481027..124481031,-p@chr5:124481027..124481031
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Mm9::chr5:124482223..124482299,-p1@Vps37b
Mm9::chr5:124529081..124529092,-p7@Abcb9
Mm9::chr5:124561794..124561804,-p@chr5:124561794..124561804
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Mm9::chr5:138227879..138227896,-p1@Mepce
Mm9::chr5:31829478..31829485,+p5@Slc4a1ap
Mm9::chr7:46773162..46773172,+p2@Zfp619
Mm9::chr8:26712166..26712175,+p16@Whsc1l1
Mm9::chr8:35217716..35217740,+p@chr8:35217716..35217740
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Mm9::chr8:35217753..35217784,+p@chr8:35217753..35217784
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Mm9::chr8:74686848..74686859,-p@chr8:74686848..74686859
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Mm9::chr8:75016122..75016164,+p@chr8:75016122..75016164
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Mm9::chr8:84082901..84082910,+p@chr8:84082901..84082910
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Mm9::chr8:87502021..87502042,-p@chr8:87502021..87502042
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Mm9::chrX:131136047..131136052,-p4@Gla


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:00041143',5'-cyclic-nucleotide phosphodiesterase activity0.0324727093882639
GO:0004112cyclic-nucleotide phosphodiesterase activity0.0324727093882639



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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