MCL coexpression mm9:136
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | 0.015339944118775 |
| GO:0004112 | cyclic-nucleotide phosphodiesterase activity | 0.015339944118775 |
| GO:0033371 | T cell secretory granule organization and biogenesis | 0.015339944118775 |
| GO:0006026 | aminoglycan catabolic process | 0.015339944118775 |
| GO:0033377 | maintenance of protein localization in T cell secretory granule | 0.015339944118775 |
| GO:0033365 | protein localization in organelle | 0.015339944118775 |
| GO:0033370 | maintenance of protein localization in mast cell secretory granule | 0.015339944118775 |
| GO:0033367 | protein localization in mast cell secretory granule | 0.015339944118775 |
| GO:0033364 | mast cell secretory granule organization and biogenesis | 0.015339944118775 |
| GO:0006027 | glycosaminoglycan catabolic process | 0.015339944118775 |
| GO:0042629 | mast cell granule | 0.015339944118775 |
| GO:0033368 | protease localization in mast cell secretory granule | 0.015339944118775 |
| GO:0033363 | secretory granule organization and biogenesis | 0.015339944118775 |
| GO:0033366 | protein localization in secretory granule | 0.015339944118775 |
| GO:0033374 | protein localization in T cell secretory granule | 0.015339944118775 |
| GO:0033382 | maintenance of granzyme B localization in T cell secretory granule | 0.015339944118775 |
| GO:0033375 | protease localization in T cell secretory granule | 0.015339944118775 |
| GO:0033373 | maintenance of protease localization in mast cell secretory granule | 0.015339944118775 |
| GO:0033380 | granzyme B localization in T cell secretory granule | 0.015339944118775 |
| GO:0033379 | maintenance of protease localization in T cell secretory granule | 0.015339944118775 |
| GO:0046069 | cGMP catabolic process | 0.015339944118775 |
| GO:0015279 | store-operated calcium channel activity | 0.0290970872203959 |
| GO:0008081 | phosphoric diester hydrolase activity | 0.0290970872203959 |
| GO:0050709 | negative regulation of protein secretion | 0.0324652120323855 |
| GO:0035110 | leg morphogenesis | 0.0324652120323855 |
| GO:0050710 | negative regulation of cytokine secretion | 0.0324652120323855 |
| GO:0019430 | removal of superoxide radicals | 0.0324652120323855 |
| GO:0009214 | cyclic nucleotide catabolic process | 0.0324652120323855 |
| GO:0005578 | proteinaceous extracellular matrix | 0.0324652120323855 |
| GO:0022610 | biological adhesion | 0.0324652120323855 |
| GO:0007155 | cell adhesion | 0.0324652120323855 |
| GO:0043169 | cation binding | 0.0337402888933625 |
| GO:0001527 | microfibril | 0.0472748244597687 |
| GO:0050707 | regulation of cytokine secretion | 0.0472748244597687 |
Relative expression of the co-expression cluster over median <br>Analyst:
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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
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