Personal tools

MacroAPE 1083:CNhs12323 bu f0

From FANTOM5_SSTAR

Revision as of 14:47, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: CNhs12323_bu_f0

Motif matrix
POACGT
1755.284387850753922.867586132807874014.51980256974290.72906901244906
2301.6389488265924604.43561020270033905.633928575750471.69235796071044
33398.8645641439175445.22057517757594901.7749534580985137.54075278616156
4886.48182824586214.0744801230444653893.76887415974689.07566303710058
5635.7912264003244125.17572685702574107.64000793682714.793884371572485
694.154661258712791751.43769912933023016.70336282132421.105122356393988
74429.41699036445152.06755036751826568.35594278293289333.5603620508458
877.2455079737354312.3695703593682024788.9605834432644.825183789384961
91717.506743246752291.625827626503023018.380042733730555.88823195876769
101467.437539942741108.051880305159123122.3969605940815185.51446472376918
111593.2558116114035112.594041703403723058.155732899442119.39525935150172
12804.2131342105909630.74600844878013354.64972922592793.79197368045347

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

SP1#MA0079.2-10.0001381460.06575760.13148210GGAGGGAGGGGGGGGGGCGGGG-
Pax4#MA0068.100.001494120.7112030.61592512GGAGGGAGGGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
Trl#MA0205.1-10.002105991.002450.61592510GGAGGGAGGGGGGAGAGAGCAA-
MZF1_5-13#MA0057.100.002588581.232160.61592510GGAGGGAGGGGGGGAGGGGGAA+
YGR067C#MA0425.120.004013541.910440.76398412GGAGGGAGGGGGTGAAAAAGTGGGGT-
btd#MA0443.100.005152142.452420.81726510GGAGGGAGGGGGAGGGGGCGGA+
UGA3#MA0410.110.00664463.162830.8294357GGAGGGAGGGGGCGGCGGGA+
Klf4#MA0039.200.007843283.73340.82943510GGAGGGAGGGGGTAAAGGAAGG+
SP1#MA0079.2-10.007843283.73340.82943510GGAGGGAGGGGGGGGGCGGGGT+
EWSR1-FLI1#MA0149.150.008959764.264850.85275312GGAGGGAGGGGGGGAAGGAAGGAAGGAAGG+
abi4#MA0123.100.01074685.115470.92985110GGAGGGAGGGGGGGGGGCACCG-
PPARG::RXRA#MA0065.210.01306296.217950.98444212GGAGGGAGGGGGGTAGGGCAAAGGTCA+
IXR1#MA0323.120.01359846.472830.98444212GGAGGGAGGGGGAAGCCGGAAGCGGGG+
RGM1#MA0366.1-60.01519327.231970.9844425GGAGGGAGGGGGAGGGG+
YML081W#MA0431.1-30.01599227.61230.9844429GGAGGGAGGGGGGTGCGGGGT-
Klf4#MA0039.2-20.01654947.877530.98444210GGAGGGAGGGGGTGGGTGGGGC+
MSN4#MA0342.1-60.01993599.489490.9997475GGAGGGAGGGGGAGGGG+