Personal tools

MacroAPE 1083:5-CCGGATTTA

From FANTOM5_SSTAR

Revision as of 13:13, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 5-CCGGATTTA,CNhs13826,BestGuess:ELK4_f1_HM09(0.684350736035022),T:1354.0(64.66%),B:23785.4(51.36%),P:1e-34

Motif matrix
POACGT
1125.922740.638251.844235.596
28.124900.41270.8174.666
32.708123.2141136.00692.072
4127.27697.4881004.668124.568
5824.586101.55223.41204.454
6270.894.78170.604817.816
7239.65860.93136.754916.658
862.284136.754163.834991.128
9794.798129.984219.348209.87

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

YDR520C#MA0422.100.0001381650.06576660.1179189CCGGATTTACCGGAGATAA+
LYS14#MA0325.100.0003527660.1679170.1179188CCGGATTTACCGGAATT+
HAP1#MA0312.1-10.0003748520.178430.1179188CCGGATTTACGGAGATA+
ASG1#MA0275.100.0005732720.2728770.1352526CCGGATTTACCGGAA+
YLR278C#MA0430.100.0007579140.3607670.1430528CCGGATTTACCGGAGTT+
YRR1#MA0439.100.0009934660.472890.1474929CCGGATTTAGCGGAGATAAG-
STB5#MA0392.1-10.001094020.5207530.1474928CCGGATTTACGGTGTTA+
OAF1#MA0348.100.001415420.6737390.166979CCGGATTTATCGGAGATA+
CAT8#MA0280.100.001598510.760890.1676166CCGGATTTACCGGAA+
RGT1#MA0367.100.002574171.225310.2429299CCGGATTTACCGGAAAAACT-
YJL103C#MA0427.130.003837921.826850.3292658CCGGATTTATCTCCGGAGCT-
ECM22#MA0292.110.004577072.178690.3388976CCGGATTTATCCGGAG-
GSM1#MA0308.160.004766452.268830.3388979CCGGATTTATATACTCCGGAGTTTTTTAAT-
Tcfcp2l1#MA0145.100.006631243.156470.4172029CCGGATTTACTGGTTTGAACTGG-
YPR015C#MA0435.130.007767253.697210.4581319CCGGATTTATGTAAGGATTTACGTCTTCA-
ELF5#MA0136.100.01172185.57960.6080149CCGGATTTAAAGGAAGTA-
TBP#MA0108.230.01265946.025890.6080149CCGGATTTACCCCGCCTTTTATAC-
TBP#MA0108.230.01265946.025890.6080149CCGGATTTACCCCGCCTTTTATAC-
REL#MA0101.100.01288556.13350.6080149CCGGATTTAGGGGATTTCC+
YER184C#MA0424.120.01447996.892450.6384976CCGGATTTATTCCGGAG-
Ptx1#MA0201.1-20.01509957.187380.6384977CCGGATTTAGGATTAA-
SMP1#MA0383.110.01556137.407160.6384979CCGGATTTATGCTAATTTAATTATAGGTAA-
ELK4#MA0076.110.01636317.788860.6434258CCGGATTTAACCGGAAGT+
SIP4#MA0380.110.01734548.256390.6547666CCGGATTTATCCGGAG-
YRM1#MA0438.100.02044589.732210.7371198CCGGATTTAACGGAAAT+