Personal tools

UBERON:0004910

From FANTOM5_SSTAR

Revision as of 13:38, 27 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:epithelium of male gonad
Definition:"An epithelium surrounding a testis." [OBOL:automatic]
Xrefs:
links:

BTO:0001364
EMAPA:17973

FBbt:00004955
Synonyms: "testis epithelium" EXACT [OBOL:automatic]
"testis sheath" NARROW SENSU [FBbt:00004955]
Comments:Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004909(epithelium of gonad)
part_of:UBERON:0000473(testis)



Children

is a:UBERON:0004813 (seminiferous tubule epithelium),UBERON:0005297 (testis sex cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004910 (epithelium of male gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_3aa22549d356ce2617e9b96e469e5ec2p26@BDNF
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_3aa22549d356ce2617e9b96e469e5ec2p26@BDNF
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_dd1b52ad56e4dcfa03104373e55932d0p43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_dd1b52ad56e4dcfa03104373e55932d0p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_dd1b52ad56e4dcfa03104373e55932d0p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_dd1b52ad56e4dcfa03104373e55932d0p43@CDC42BPA
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_a733cadb9763bfdda9f220d20157e02cp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_a733cadb9763bfdda9f220d20157e02cp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_a733cadb9763bfdda9f220d20157e02cp7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_a733cadb9763bfdda9f220d20157e02cp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_a733cadb9763bfdda9f220d20157e02cp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_a733cadb9763bfdda9f220d20157e02cp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_a733cadb9763bfdda9f220d20157e02cp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_a733cadb9763bfdda9f220d20157e02cp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_a733cadb9763bfdda9f220d20157e02cp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_a733cadb9763bfdda9f220d20157e02cp7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_a733cadb9763bfdda9f220d20157e02cp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_a733cadb9763bfdda9f220d20157e02cp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_a733cadb9763bfdda9f220d20157e02cp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_a733cadb9763bfdda9f220d20157e02cp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_a733cadb9763bfdda9f220d20157e02cp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_a733cadb9763bfdda9f220d20157e02cp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_a733cadb9763bfdda9f220d20157e02cp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_a733cadb9763bfdda9f220d20157e02cp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_a733cadb9763bfdda9f220d20157e02cp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_a733cadb9763bfdda9f220d20157e02cp@chr3:170430340..170430344, +
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_075466a69953b146549ccafd0795de65p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_075466a69953b146549ccafd0795de65p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_79322a749f85cfdbf0315795a62d30e1p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_79322a749f85cfdbf0315795a62d30e1p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_79322a749f85cfdbf0315795a62d30e1p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_79322a749f85cfdbf0315795a62d30e1p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_79322a749f85cfdbf0315795a62d30e1p21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_79322a749f85cfdbf0315795a62d30e1p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_79322a749f85cfdbf0315795a62d30e1p22@TMEM130
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_79322a749f85cfdbf0315795a62d30e1p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_79322a749f85cfdbf0315795a62d30e1p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_79322a749f85cfdbf0315795a62d30e1p22@TMEM130
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_3f7e00d6dafc41ff0b6f36d869e65204p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_3f7e00d6dafc41ff0b6f36d869e65204p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_3f7e00d6dafc41ff0b6f36d869e65204p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_3f7e00d6dafc41ff0b6f36d869e65204p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_3f7e00d6dafc41ff0b6f36d869e65204p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_3f7e00d6dafc41ff0b6f36d869e65204p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_3f7e00d6dafc41ff0b6f36d869e65204p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_3f7e00d6dafc41ff0b6f36d869e65204p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_3f7e00d6dafc41ff0b6f36d869e65204p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_3f7e00d6dafc41ff0b6f36d869e65204p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_3f7e00d6dafc41ff0b6f36d869e65204p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_3f7e00d6dafc41ff0b6f36d869e65204p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_3f7e00d6dafc41ff0b6f36d869e65204p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_3f7e00d6dafc41ff0b6f36d869e65204p@chr3:170916991..170916995, -
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_53841b7e8ffa84a6961ed5a07919d44ep4@Spink12
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_53841b7e8ffa84a6961ed5a07919d44ep4@Spink12
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_8290e4d77f814f5e4430ac363d332c92p@chr11:114173606..114173612, +
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_8290e4d77f814f5e4430ac363d332c92p@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_8290e4d77f814f5e4430ac363d332c92p@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_8290e4d77f814f5e4430ac363d332c92p8@TCF21
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_8290e4d77f814f5e4430ac363d332c92p8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_8290e4d77f814f5e4430ac363d332c92p@chr2:177009137..177009140, +
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_f47dcb995eb7ead4624d096efc33e0e0p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_f47dcb995eb7ead4624d096efc33e0e0p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_f47dcb995eb7ead4624d096efc33e0e0p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_f47dcb995eb7ead4624d096efc33e0e0p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_f47dcb995eb7ead4624d096efc33e0e0p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_f47dcb995eb7ead4624d096efc33e0e0p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_f47dcb995eb7ead4624d096efc33e0e0p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_f47dcb995eb7ead4624d096efc33e0e0p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_f47dcb995eb7ead4624d096efc33e0e0p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_f47dcb995eb7ead4624d096efc33e0e0p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_f47dcb995eb7ead4624d096efc33e0e0p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_f47dcb995eb7ead4624d096efc33e0e0p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_f47dcb995eb7ead4624d096efc33e0e0p11@USP25
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_f47dcb995eb7ead4624d096efc33e0e0p6@C2orf63
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_112befab8b9566dbe8399a7e8c658d5bp@chr4:103969123..103969127, -
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_112befab8b9566dbe8399a7e8c658d5bp@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_112befab8b9566dbe8399a7e8c658d5bp@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_112befab8b9566dbe8399a7e8c658d5bp10@ESR2
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_112befab8b9566dbe8399a7e8c658d5bp10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_112befab8b9566dbe8399a7e8c658d5bp@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_112befab8b9566dbe8399a7e8c658d5bp@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_112befab8b9566dbe8399a7e8c658d5bp11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_112befab8b9566dbe8399a7e8c658d5bp11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_112befab8b9566dbe8399a7e8c658d5bp@chr4:103969123..103969127, -
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_80c550d1cbcd215d3de278841042d7e3p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_80c550d1cbcd215d3de278841042d7e3p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_80c550d1cbcd215d3de278841042d7e3p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_80c550d1cbcd215d3de278841042d7e3p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_80c550d1cbcd215d3de278841042d7e3p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_80c550d1cbcd215d3de278841042d7e3p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_80c550d1cbcd215d3de278841042d7e3p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_80c550d1cbcd215d3de278841042d7e3p51@CDK6
4.52e-44FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_d2f7da8088205461b5ecfeb19f8a62fcp@chr17:75581992..75582009, +
4.52e-44FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_d2f7da8088205461b5ecfeb19f8a62fcp@chr17:75581992..75582009, +
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_ca12c114adef70dc180da6440e3ff8f4p@chr3:194214959..194214968, -
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_ca12c114adef70dc180da6440e3ff8f4p@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_e64105d6ad47eaf42cb7f0e583780acbp8@ENDOD1
9.91e-41FFCP PHASE1:Hg19::chr11:94822746..94822757,+#_e64105d6ad47eaf42cb7f0e583780acbp8@ENDOD1
9.91e-41FFCP PHASE2:Hg19::chr13:49549473..49549480,+#_e64105d6ad47eaf42cb7f0e583780acbp@chr13:49549473..49549480, +
9.91e-41FFCP PHASE1:Hg19::chr22:44377278..44377303,+#_e64105d6ad47eaf42cb7f0e583780acbp@chr22:44377278..44377303, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004910&oldid=1837865"