Personal tools

UBERON:0003830

From FANTOM5_SSTAR

Revision as of 13:34, 27 June 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:thoracic segment muscle
Definition:"A muscle organ that is part of a thorax [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000561
Synonyms: "muscle organ of thorax" EXACT [OBOL:automatic]
"thorax muscle organ" EXACT [OBOL:automatic]
"upper body muscle" RELATED [MA:0000561]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001774(muscle of trunk),UBERON:0005181(thoracic segment organ)
part_of:UBERON:0000915(thoracic segment of trunk)



Children

is a:UBERON:0002426 (chest muscle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003830 (thoracic segment muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr18:10458574..10458579,-#_6162e5f54eb07b6284b54aa22f8ab8dbp@chr18:10458574..10458579, -
5.42e-195FFCP PHASE2:Hg19::chr18:10458574..10458579,-#_6162e5f54eb07b6284b54aa22f8ab8dbp@chr18:10458574..10458579, -
2.55e-98FFCP PHASE2:Hg19::chr17:39324471..39324474,-#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP4-3
2.55e-98FFCP PHASE1:Hg19::chr9:101832711..101832718,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr9:101832711..101832718, +
2.55e-98FFCP PHASE1:Hg19::chr20:31571662..31571664,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr20:31571662..31571664, +
2.55e-98FFCP PHASE1:Hg19::chr11:64518023..64518030,-#_c5328bec93fc3c8bc2ff71cbd86d6910p19@PYGM
2.55e-98FFCP PHASE2:Hg19::chr3:112929906..112929910,+#_c5328bec93fc3c8bc2ff71cbd86d6910p13@BOC
2.55e-98FFCP PHASE1:Hg19::chr17:39334471..39334474,-#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP4-2
2.55e-98FFCP PHASE2:Hg19::chr17:39334471..39334474,-#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP4-2
2.55e-98FFCP PHASE1:Hg19::chr3:112929906..112929910,+#_c5328bec93fc3c8bc2ff71cbd86d6910p13@BOC
2.55e-98FFCP PHASE1:Hg19::chr17:39388700..39388702,+#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP9-3, p1@KRTAP9-9
2.55e-98FFCP PHASE2:Hg19::chr17:39388700..39388702,+#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP9-3, p1@KRTAP9-9
2.55e-98FFCP PHASE2:Hg19::chr11:64518023..64518030,-#_c5328bec93fc3c8bc2ff71cbd86d6910p19@PYGM
2.55e-98FFCP PHASE2:Hg19::chr8:115584851..115584862,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr8:115584851..115584862, +
2.55e-98FFCP PHASE1:Hg19::chr17:39394250..39394253,+#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP9-8
2.55e-98FFCP PHASE1:Hg19::chr8:115584851..115584862,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr8:115584851..115584862, +
2.55e-98FFCP PHASE1:Hg19::chr17:10428881..10428898,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr17:10428881..10428898, +
2.55e-98FFCP PHASE2:Hg19::chr17:39394250..39394253,+#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP9-8
2.55e-98FFCP PHASE1:Hg19::chr1:223065647..223065654,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr1:223065647..223065654, +
2.55e-98FFCP PHASE2:Hg19::chr17:10428881..10428898,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr17:10428881..10428898, +
2.55e-98FFCP PHASE1:Hg19::chr17:39306068..39306077,-#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP4-5
2.55e-98FFCP PHASE2:Hg19::chr1:223065647..223065654,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr1:223065647..223065654, +
2.55e-98FFCP PHASE2:Hg19::chr9:101832711..101832718,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr9:101832711..101832718, +
2.55e-98FFCP PHASE2:Hg19::chr17:39306068..39306077,-#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP4-5
2.55e-98FFCP PHASE1:Hg19::chr1:223065664..223065673,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr1:223065664..223065673, +
2.55e-98FFCP PHASE1:Hg19::chr17:39324471..39324474,-#_c5328bec93fc3c8bc2ff71cbd86d6910p1@KRTAP4-3
2.55e-98FFCP PHASE2:Hg19::chr20:31571662..31571664,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr20:31571662..31571664, +
2.55e-98FFCP PHASE2:Hg19::chr1:223065664..223065673,+#_c5328bec93fc3c8bc2ff71cbd86d6910p@chr1:223065664..223065673, +
1.23e-66FFCP PHASE2:Hg19::chr10:75226166..75226169,-#_65a31c2dde620d50aa6182ce4136b30ap6@PPP3CB
1.23e-66FFCP PHASE1:Hg19::chr10:75226166..75226169,-#_65a31c2dde620d50aa6182ce4136b30ap6@PPP3CB
1.23e-66FFCP PHASE1:Hg19::chr12:102075405..102075407,+#_65a31c2dde620d50aa6182ce4136b30ap@chr12:102075405..102075407, +
1.23e-66FFCP PHASE2:Hg19::chr19:50994855..50994864,-#_65a31c2dde620d50aa6182ce4136b30ap@chr19:50994855..50994864, -
1.23e-66FFCP PHASE1:Hg19::chr19:50994855..50994864,-#_65a31c2dde620d50aa6182ce4136b30ap@chr19:50994855..50994864, -
1.23e-66FFCP PHASE1:Hg19::chr11:126077478..126077485,-#_65a31c2dde620d50aa6182ce4136b30ap4@RPUSD4
1.23e-66FFCP PHASE2:Hg19::chr12:102075405..102075407,+#_65a31c2dde620d50aa6182ce4136b30ap@chr12:102075405..102075407, +
1.23e-66FFCP PHASE2:Hg19::chr11:126077478..126077485,-#_65a31c2dde620d50aa6182ce4136b30ap4@RPUSD4
2.39e-66FFCP PHASE1:Hg19::chr2:179588230..179588237,-#_fb632072e592f7ea0eea5d04d70519a5p@chr2:179588230..179588237, -
2.39e-66FFCP PHASE2:Hg19::chr10:24407264..24407270,-#_fb632072e592f7ea0eea5d04d70519a5p@chr10:24407264..24407270, -
2.39e-66FFCP PHASE1:Hg19::chr10:99343436..99343448,+#_fb632072e592f7ea0eea5d04d70519a5p@chr10:99343436..99343448, +
2.39e-66FFCP PHASE2:Hg19::chr11:1955193..1955200,+#_fb632072e592f7ea0eea5d04d70519a5p23@TNNT3
2.39e-66FFCP PHASE2:Hg19::chr4:26165179..26165190,+#_fb632072e592f7ea0eea5d04d70519a5p47@RBPJ
2.39e-66FFCP PHASE2:Hg19::chr2:179542420..179542428,-#_fb632072e592f7ea0eea5d04d70519a5p@chr2:179542420..179542428, -
2.39e-66FFCP PHASE1:Hg19::chr2:179548750..179548755,-#_fb632072e592f7ea0eea5d04d70519a5p@chr2:179548750..179548755, -
2.39e-66FFCP PHASE2:Hg19::chr5:7727283..7727284,+#_fb632072e592f7ea0eea5d04d70519a5p19@ADCY2
2.39e-66FFCP PHASE1:Hg19::chr15:99548796..99548805,-#_fb632072e592f7ea0eea5d04d70519a5p3@PGPEP1L
2.39e-66FFCP PHASE1:Hg19::chr10:24407264..24407270,-#_fb632072e592f7ea0eea5d04d70519a5p@chr10:24407264..24407270, -
2.39e-66FFCP PHASE1:Hg19::chr19:50997736..50997745,-#_fb632072e592f7ea0eea5d04d70519a5p@chr19:50997736..50997745, -
2.39e-66FFCP PHASE1:Hg19::chr2:179542420..179542428,-#_fb632072e592f7ea0eea5d04d70519a5p@chr2:179542420..179542428, -
2.39e-66FFCP PHASE1:Hg19::chr12:68185216..68185218,+#_fb632072e592f7ea0eea5d04d70519a5p@chr12:68185216..68185218, +
2.39e-66FFCP PHASE1:Hg19::chr5:7727283..7727284,+#_fb632072e592f7ea0eea5d04d70519a5p19@ADCY2
2.39e-66FFCP PHASE2:Hg19::chr15:99548796..99548805,-#_fb632072e592f7ea0eea5d04d70519a5p3@PGPEP1L
2.39e-66FFCP PHASE2:Hg19::chr19:50997736..50997745,-#_fb632072e592f7ea0eea5d04d70519a5p@chr19:50997736..50997745, -
2.39e-66FFCP PHASE2:Hg19::chr12:68185216..68185218,+#_fb632072e592f7ea0eea5d04d70519a5p@chr12:68185216..68185218, +
2.39e-66FFCP PHASE2:Hg19::chr7:123241760..123241766,-#_fb632072e592f7ea0eea5d04d70519a5p@chr7:123241760..123241766, -
2.39e-66FFCP PHASE1:Hg19::chr4:26165179..26165190,+#_fb632072e592f7ea0eea5d04d70519a5p47@RBPJ
2.39e-66FFCP PHASE1:Hg19::chr17:10533450..10533457,+#_fb632072e592f7ea0eea5d04d70519a5p@chr17:10533450..10533457, +
2.39e-66FFCP PHASE2:Hg19::chr2:26700872..26700884,-#_fb632072e592f7ea0eea5d04d70519a5p5@OTOF
2.39e-66FFCP PHASE2:Hg19::chr17:10533450..10533457,+#_fb632072e592f7ea0eea5d04d70519a5p@chr17:10533450..10533457, +
2.39e-66FFCP PHASE1:Hg19::chr14:97684658..97684662,+#_fb632072e592f7ea0eea5d04d70519a5p@chr14:97684658..97684662, +
2.39e-66FFCP PHASE1:Hg19::chr7:123241760..123241766,-#_fb632072e592f7ea0eea5d04d70519a5p@chr7:123241760..123241766, -
2.39e-66FFCP PHASE1:Hg19::chr2:26700872..26700884,-#_fb632072e592f7ea0eea5d04d70519a5p5@OTOF
2.39e-66FFCP PHASE2:Hg19::chr14:97684658..97684662,+#_fb632072e592f7ea0eea5d04d70519a5p@chr14:97684658..97684662, +
2.39e-66FFCP PHASE1:Hg19::chr11:1955193..1955200,+#_fb632072e592f7ea0eea5d04d70519a5p23@TNNT3
2.39e-66FFCP PHASE2:Hg19::chr2:179588230..179588237,-#_fb632072e592f7ea0eea5d04d70519a5p@chr2:179588230..179588237, -
2.39e-66FFCP PHASE2:Hg19::chr10:99343436..99343448,+#_fb632072e592f7ea0eea5d04d70519a5p@chr10:99343436..99343448, +
2.39e-66FFCP PHASE2:Hg19::chr2:179548750..179548755,-#_fb632072e592f7ea0eea5d04d70519a5p@chr2:179548750..179548755, -
4.66e-66FFCP PHASE2:Hg19::chr17:38911580..38911584,-#_3d146ac62360bec09a1edcd0134a2b98p1@KRT25
4.66e-66FFCP PHASE1:Hg19::chr2:152514527..152514536,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152514527..152514536, -
4.66e-66FFCP PHASE2:Hg19::chr12:52695617..52695623,+#_3d146ac62360bec09a1edcd0134a2b98p4@KRT86
4.66e-66FFCP PHASE2:Hg19::chr8:82373809..82373815,-#_3d146ac62360bec09a1edcd0134a2b98p1@FABP9
4.66e-66FFCP PHASE1:Hg19::chr13:28961100..28961122,-#_3d146ac62360bec09a1edcd0134a2b98p14@FLT1
4.66e-66FFCP PHASE1:Hg19::chr17:38938796..38938803,-#_3d146ac62360bec09a1edcd0134a2b98p1@KRT27
4.66e-66FFCP PHASE2:Hg19::chr13:28961100..28961122,-#_3d146ac62360bec09a1edcd0134a2b98p14@FLT1
4.66e-66FFCP PHASE2:Hg19::chr17:38938796..38938803,-#_3d146ac62360bec09a1edcd0134a2b98p1@KRT27
4.66e-66FFCP PHASE2:Hg19::chr2:152419209..152419216,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152419209..152419216, -
4.66e-66FFCP PHASE2:Hg19::chr2:168106984..168106993,+#_3d146ac62360bec09a1edcd0134a2b98p34@XIRP2
4.66e-66FFCP PHASE2:Hg19::chr2:168105377..168105386,+#_3d146ac62360bec09a1edcd0134a2b98p28@XIRP2
4.66e-66FFCP PHASE1:Hg19::chr8:82373809..82373815,-#_3d146ac62360bec09a1edcd0134a2b98p1@FABP9
4.66e-66FFCP PHASE2:Hg19::chr2:152342364..152342373,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152342364..152342373, -
4.66e-66FFCP PHASE1:Hg19::chr2:152419209..152419216,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152419209..152419216, -
4.66e-66FFCP PHASE1:Hg19::chr2:168106984..168106993,+#_3d146ac62360bec09a1edcd0134a2b98p34@XIRP2
4.66e-66FFCP PHASE1:Hg19::chr2:168105377..168105386,+#_3d146ac62360bec09a1edcd0134a2b98p28@XIRP2
4.66e-66FFCP PHASE1:Hg19::chr2:152342364..152342373,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152342364..152342373, -
4.66e-66FFCP PHASE1:Hg19::chr17:10544511..10544520,-#_3d146ac62360bec09a1edcd0134a2b98p@chr17:10544511..10544520, -
4.66e-66FFCP PHASE2:Hg19::chr17:10544511..10544520,-#_3d146ac62360bec09a1edcd0134a2b98p@chr17:10544511..10544520, -
4.66e-66FFCP PHASE1:Hg19::chr17:39507076..39507080,-#_3d146ac62360bec09a1edcd0134a2b98p1@KRT33A
4.66e-66FFCP PHASE2:Hg19::chr2:152393686..152393693,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152393686..152393693, -
4.66e-66FFCP PHASE2:Hg19::chr2:152476098..152476105,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152476098..152476105, -
4.66e-66FFCP PHASE2:Hg19::chr17:39507076..39507080,-#_3d146ac62360bec09a1edcd0134a2b98p1@KRT33A
4.66e-66FFCP PHASE2:Hg19::chr2:152514527..152514536,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152514527..152514536, -
4.66e-66FFCP PHASE1:Hg19::chr2:152393686..152393693,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152393686..152393693, -
4.66e-66FFCP PHASE1:Hg19::chr2:152476098..152476105,-#_3d146ac62360bec09a1edcd0134a2b98p@chr2:152476098..152476105, -
4.66e-66FFCP PHASE1:Hg19::chr12:52695617..52695623,+#_3d146ac62360bec09a1edcd0134a2b98p4@KRT86
4.66e-66FFCP PHASE1:Hg19::chr17:38911580..38911584,-#_3d146ac62360bec09a1edcd0134a2b98p1@KRT25
1.46e-50FFCP PHASE2:Hg19::chr10:35104131..35104138,-#_ea9c92a9f3375206a6d3d37d902c7c53p4@PARD3
1.46e-50FFCP PHASE2:Hg19::chr22:32647133..32647135,-#_ea9c92a9f3375206a6d3d37d902c7c53p@chr22:32647133..32647135, -
1.46e-50FFCP PHASE1:Hg19::chr10:35104131..35104138,-#_ea9c92a9f3375206a6d3d37d902c7c53p4@PARD3
1.46e-50FFCP PHASE1:Hg19::chr22:32647133..32647135,-#_ea9c92a9f3375206a6d3d37d902c7c53p@chr22:32647133..32647135, -
1.46e-50FFCP PHASE2:Hg19::chr11:94476841..94476846,+#_ea9c92a9f3375206a6d3d37d902c7c53p@chr11:94476841..94476846, +
1.46e-50FFCP PHASE2:Hg19::chrX:21672387..21672391,-#_ea9c92a9f3375206a6d3d37d902c7c53p@chrX:21672387..21672391, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003830&oldid=1837740"