Personal tools

UBERON:0005705

From FANTOM5_SSTAR

Revision as of 17:06, 26 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:primary palate mesenchyme
Xrefs:
links:

EHDAA2:0001501
EHDAA:6968
EMAPA:17644
EMAPA:17936

VHOG:0001024

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003323(mesenchyme of upper jaw),UBERON:0004119(endoderm-derived structure),UBERON:0010258(mesenchyme from rhombencephalic neural crest)



Children

is a:FF:10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005705 (primary palate mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_3857f512004bd3028ff93959f7d89580p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_3857f512004bd3028ff93959f7d89580p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_632437989274d52883e0346baf552eefp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_632437989274d52883e0346baf552eefp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_632437989274d52883e0346baf552eefp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_632437989274d52883e0346baf552eefp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_632437989274d52883e0346baf552eefp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_632437989274d52883e0346baf552eefp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_632437989274d52883e0346baf552eefp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_632437989274d52883e0346baf552eefp@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_f391a1ac31e4296c01aeadbd3d979a7bp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_f391a1ac31e4296c01aeadbd3d979a7bp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_f391a1ac31e4296c01aeadbd3d979a7bp14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_f391a1ac31e4296c01aeadbd3d979a7bp14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_54657a313ba8256cccfb1b7b0b4dc7e9p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_54657a313ba8256cccfb1b7b0b4dc7e9p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_45dd3b087499b50270409639485d6589p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_45dd3b087499b50270409639485d6589p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_45dd3b087499b50270409639485d6589p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_45dd3b087499b50270409639485d6589p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_45dd3b087499b50270409639485d6589p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_45dd3b087499b50270409639485d6589p9@C17orf67
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_93788fa43e24e1275fe5003618d9c038p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_93788fa43e24e1275fe5003618d9c038p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_917166cb036059aa8295ac48377ff352p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_917166cb036059aa8295ac48377ff352p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_917166cb036059aa8295ac48377ff352p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_917166cb036059aa8295ac48377ff352p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_917166cb036059aa8295ac48377ff352p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_917166cb036059aa8295ac48377ff352p@chr5:75913767..75913778, -
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_d6007e92b1329c46586d4056565b0db6p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_d6007e92b1329c46586d4056565b0db6p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_d6007e92b1329c46586d4056565b0db6p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_d6007e92b1329c46586d4056565b0db6p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_1ba746361b8f7f0d2fe1b4c128ee6538p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_1ba746361b8f7f0d2fe1b4c128ee6538p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_1ba746361b8f7f0d2fe1b4c128ee6538p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_1ba746361b8f7f0d2fe1b4c128ee6538p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_1ba746361b8f7f0d2fe1b4c128ee6538p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_1ba746361b8f7f0d2fe1b4c128ee6538p@chr8:57354143..57354152, +
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_a0fa28a459d5f22e798d0720fd5e837ap2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_a0fa28a459d5f22e798d0720fd5e837ap12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_a0fa28a459d5f22e798d0720fd5e837ap8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_a0fa28a459d5f22e798d0720fd5e837ap2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_a0fa28a459d5f22e798d0720fd5e837ap8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_a0fa28a459d5f22e798d0720fd5e837ap12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_835ab41aab0b51a4c7919e136130b383p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_835ab41aab0b51a4c7919e136130b383p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_835ab41aab0b51a4c7919e136130b383p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_835ab41aab0b51a4c7919e136130b383p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_fed714f901ee02b9949cad5415378bd9p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_fed714f901ee02b9949cad5415378bd9p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_fed714f901ee02b9949cad5415378bd9p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_fed714f901ee02b9949cad5415378bd9p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_1cc50f3828dd345f70abf76b2694070fp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_1cc50f3828dd345f70abf76b2694070fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_1cc50f3828dd345f70abf76b2694070fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_1cc50f3828dd345f70abf76b2694070fp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_1cc50f3828dd345f70abf76b2694070fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_1cc50f3828dd345f70abf76b2694070fp5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_8b0e3147f6f9cde71f67b2e85f7b031dp9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_8b0e3147f6f9cde71f67b2e85f7b031dp9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_c32906173d9d6c2bed022fab2943ca3bp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_c32906173d9d6c2bed022fab2943ca3bp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_aaa9a531d2afa327639069af7bf18bb9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_aaa9a531d2afa327639069af7bf18bb9p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_aaa9a531d2afa327639069af7bf18bb9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_aaa9a531d2afa327639069af7bf18bb9p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_92b6521d3cbcecdbff65c34ce3008303p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_92b6521d3cbcecdbff65c34ce3008303p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_92b6521d3cbcecdbff65c34ce3008303p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_92b6521d3cbcecdbff65c34ce3008303p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_92b6521d3cbcecdbff65c34ce3008303p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_92b6521d3cbcecdbff65c34ce3008303p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_411c941aa5dbe0ed5ed1308db0ed1b59p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_411c941aa5dbe0ed5ed1308db0ed1b59p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_411c941aa5dbe0ed5ed1308db0ed1b59p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_411c941aa5dbe0ed5ed1308db0ed1b59p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_411c941aa5dbe0ed5ed1308db0ed1b59p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_411c941aa5dbe0ed5ed1308db0ed1b59p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_bcb4082db006c11c24908455760a1638p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_bcb4082db006c11c24908455760a1638p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_bcb4082db006c11c24908455760a1638p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_bcb4082db006c11c24908455760a1638p10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_634b54322dfc504cfe0ff58db0f9045fp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_634b54322dfc504cfe0ff58db0f9045fp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_634b54322dfc504cfe0ff58db0f9045fp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_634b54322dfc504cfe0ff58db0f9045fp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_634b54322dfc504cfe0ff58db0f9045fp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_634b54322dfc504cfe0ff58db0f9045fp@chr17:79071218..79071221, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_5ef74f776c12d1ef220c3a0a47a359eap@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_5ef74f776c12d1ef220c3a0a47a359eap@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_2e9ad805a70042c47019aae9d456b54ep@chr1:75602768..75602785, +
4.2e-29FFCP PHASE1:Hg19::chr15:52606315..52606320,-#_2e9ad805a70042c47019aae9d456b54ep@chr15:52606315..52606320, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005705&oldid=1836153"