Personal tools

UBERON:0001004

From FANTOM5_SSTAR

Revision as of 17:10, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:respiratory system
Definition:"Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system]
Xrefs:
links:

AAO:0000541
BTO:0000203
EFO:0000804
EHDAA:2203
EHDAA2:0001604
EMAPA:16727
EV:0100036
FMA:7158
GAID:78
[ 200px-Respiratory_system_complete_en.svg.png 200px-Respiratory_system_complete_en.svg.png]
MA:0000327
MAT:0000030
MESH:A.04
MIAA:0000030
ncithesaurus:Respiratory_System
OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
SCTID:278197002
TAO:0000272
VHOG:0000202
XAO:0000117

ZFA:0000272
Synonyms: "apparatus respiratorius" EXACT []
"apparatus respiratorius " RELATED [BTO:0000203]
"Atmungssystem" RELATED [BTO:0000203]
"respiratory system" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0001007(digestive system),UBERON:0001008(renal system),UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system)
part of:UBERON:0000004 (olfactory apparatus),UBERON:0000065 (respiratory tract),UBERON:0000171 (respiration organ),UBERON:0001005 (respiratory airway),UBERON:0001042 (chordate pharynx),UBERON:0001103 (diaphragm),UBERON:0001825 (paranasal sinus),UBERON:0003469 (respiratory system artery),UBERON:0003504 (respiratory system blood vessel),UBERON:0003643 (respiratory system arterial blood vessel),UBERON:0003831 (respiratory system muscle),UBERON:0004225 (respiratory system smooth muscle),UBERON:0004785 (respiratory system mucosa),UBERON:0004807 (respiratory system epithelium),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0004903 (bronchoalveolar duct junction)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001004 (respiratory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-39FFCP PHASE2:Mm9::chr2:26212358..26212425,-#_4f841e863c09055763712acac43eb819p@chr2:26212358..26212425, -
1.75e-39FFCP PHASE1:Mm9::chr2:26212358..26212425,-#_4f841e863c09055763712acac43eb819p@chr2:26212358..26212425, -
6.87e-38FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_b80633d4a4f18f740684cefc904d5d43p2@ALDH3A1
6.87e-38FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_b80633d4a4f18f740684cefc904d5d43p2@ALDH3A1
3.62e-36FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_90f848660a33c0b6e32e095049e920b3p4@uc009bpa.1
3.62e-36FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_90f848660a33c0b6e32e095049e920b3p4@uc009bpa.1
5.83e-36FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_3b5b4fa891ee5c5126760f7560b71237p8@uc009bpa.1
5.83e-36FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_3b5b4fa891ee5c5126760f7560b71237p8@uc009bpa.1
1.54e-34FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_56127415c5639172962772b0c9b478fdp1@ENSMUST00000103288, p1@uc009bpl.1
1.54e-34FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_56127415c5639172962772b0c9b478fdp1@ENSMUST00000103288, p1@uc009bpl.1
2.37e-34FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_0e6db7152fbf0ccc34ad5e1271f30bb1p5@Tcf7
2.37e-34FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_0e6db7152fbf0ccc34ad5e1271f30bb1p5@Tcf7
2.86e-34FFCP PHASE1:Hg19::chr17:19651598..19651620,-#_f8d8943866d2d27db87fe2e3d2f41b11p1@ALDH3A1
2.86e-34FFCP PHASE2:Hg19::chr17:19651598..19651620,-#_f8d8943866d2d27db87fe2e3d2f41b11p1@ALDH3A1
3.22e-34FFCP PHASE2:Mm9::chr6:124838183..124838199,-#_9c9f9d5cb9bb20fea98297b606d29550p2@Cd4
3.22e-34FFCP PHASE1:Mm9::chr6:124838183..124838199,-#_9c9f9d5cb9bb20fea98297b606d29550p2@Cd4
4.88e-34FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr12:108361918..108361930, -
4.88e-34FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr12:108361918..108361930, -
4.88e-34FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr6:41491752..41491776, -
4.88e-34FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr6:41491752..41491776, -
5.45e-34FFCP PHASE2:Mm9::chr6:33991787..33991793,-#_e358035bdc4f8e478730ee586d91e6e6p@chr6:33991787..33991793, -
5.45e-34FFCP PHASE1:Mm9::chr6:33991787..33991793,-#_e358035bdc4f8e478730ee586d91e6e6p@chr6:33991787..33991793, -
4.58e-33FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_86791a9f0c8c1bcbb7cd44a705df83f9p2@ENSMUST00000103283
4.58e-33FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_86791a9f0c8c1bcbb7cd44a705df83f9p2@ENSMUST00000103283
5.19e-33FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_74658944c200768506b08ba24029b0e7p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
5.19e-33FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_74658944c200768506b08ba24029b0e7p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
1.75e-32FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_b66872afbb21b75a924b913185b81228p@chr6:41494001..41494028, +
1.75e-32FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_b66872afbb21b75a924b913185b81228p@chr6:41494001..41494028, +
2.21e-32FFCP PHASE1:Mm9::chr7:25692688..25692751,+#_5f3e2f7659130c24b4399fbaad676968p5@Arhgef1
2.21e-32FFCP PHASE2:Mm9::chr7:25692688..25692751,+#_5f3e2f7659130c24b4399fbaad676968p5@Arhgef1
2.32e-32FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_1285009a5b9a41854e1875d2d22a6d95p@chr9:44807434..44807445, -
2.32e-32FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_1285009a5b9a41854e1875d2d22a6d95p@chr9:44807434..44807445, -
2.56e-32FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_a81d898ad2cbb75ddaeaab967ddd564ap1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
2.56e-32FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_a81d898ad2cbb75ddaeaab967ddd564ap1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
2.6e-32FFCP PHASE1:Mm9::chr12:74842928..74842966,+#_8e46d406dbb1dae1c94046508e4a47adp@chr12:74842928..74842966, +
2.6e-32FFCP PHASE2:Mm9::chr12:74842928..74842966,+#_8e46d406dbb1dae1c94046508e4a47adp@chr12:74842928..74842966, +
2.94e-32FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_3c614ab6c4ce2b7433a27dbc638a41f9p11@Prkcq
2.94e-32FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_3c614ab6c4ce2b7433a27dbc638a41f9p11@Prkcq
3.0e-32FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_2f3ea996a06ceec1564af4158fc17672p1@ENSMUST00000103298, p1@uc009bpy.1
3.0e-32FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_2f3ea996a06ceec1564af4158fc17672p1@ENSMUST00000103298, p1@uc009bpy.1
3.55e-32FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_dc33cc3a81f38c1fd3404b09b246d4c0p@chr14:54791784..54791787, +
3.55e-32FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_dc33cc3a81f38c1fd3404b09b246d4c0p@chr14:54791784..54791787, +
3.64e-32FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_55102f4c04d6717bc9336670db2fc91ep@chr6:41492605..41492621, +
3.64e-32FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_55102f4c04d6717bc9336670db2fc91ep@chr6:41492605..41492621, +
4.3e-32FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_2fe5fa914704c7e3b5ec5ae829cce4eap@chr9:44809185..44809215, -
4.3e-32FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_2fe5fa914704c7e3b5ec5ae829cce4eap@chr9:44809185..44809215, -
4.87e-32FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_2e0b4a899dcfb150dff95650fabee0a3p1@ENSMUST00000103263
4.87e-32FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_2e0b4a899dcfb150dff95650fabee0a3p1@ENSMUST00000103263
5.15e-32FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_28b4a91ae5c5d621345f149d0caebac4p@chr9:44793518..44793537, +
5.15e-32FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_28b4a91ae5c5d621345f149d0caebac4p@chr9:44793518..44793537, +
5.94e-32FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_ef577a5497d0b19988ae2bef7b13f204p@chr6:41071548..41071565, +
5.94e-32FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_ef577a5497d0b19988ae2bef7b13f204p@chr6:41071548..41071565, +
7.75e-32FFCP PHASE1:Mm9::chr6:41483853..41483880,+#_bc7dd5ac3ee8bbc4e823aba330094d72p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
7.75e-32FFCP PHASE2:Mm9::chr6:41483853..41483880,+#_bc7dd5ac3ee8bbc4e823aba330094d72p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
1.06e-31FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_d32e588b6475e5af0f9d3b41bc46a2bbp5@Themis
1.06e-31FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_d32e588b6475e5af0f9d3b41bc46a2bbp5@Themis
1.15e-31FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_e4afc4233e08434d23a50ae9f2fe8bb0p5@uc009bpa.1
1.15e-31FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_e4afc4233e08434d23a50ae9f2fe8bb0p5@uc009bpa.1
1.36e-31FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_76624de75a53a110ad30f9fdacd421d5p2@uc009bnp.1, p2@uc012eki.1
1.36e-31FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_76624de75a53a110ad30f9fdacd421d5p2@uc009bnp.1, p2@uc012eki.1
1.4e-30FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_e242cf8a0c7b67b8ddbc58f8d0d94c48p@chr14:61328148..61328173, +
1.4e-30FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_e242cf8a0c7b67b8ddbc58f8d0d94c48p@chr14:61328148..61328173, +
1.77e-30FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_c04166a4ebecaeb6710653795ad96da9p1@uc012ekr.1
1.77e-30FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_c04166a4ebecaeb6710653795ad96da9p1@uc012ekr.1
2.01e-30FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_74bba1fc34402356d5a982dbacf7b775p2@1810009J06Rik
2.01e-30FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_74bba1fc34402356d5a982dbacf7b775p2@1810009J06Rik
2.38e-30FFCP PHASE2:Mm9::chr11:52067405..52067434,-#_9135f8347180318b24be7fd50f4c0f46p@chr11:52067405..52067434, -
2.38e-30FFCP PHASE1:Mm9::chr11:52067405..52067434,-#_9135f8347180318b24be7fd50f4c0f46p@chr11:52067405..52067434, -
2.41e-30FFCP PHASE1:Hg19::chr14:37131058..37131139,+#_7c2d2a81ae0617205273b4cc77d25fd9p1@PAX9
2.41e-30FFCP PHASE2:Hg19::chr14:37131058..37131139,+#_7c2d2a81ae0617205273b4cc77d25fd9p1@PAX9
2.49e-30FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_176eaeb53a334fced44f289d2b0a10bfp1@uc012ekk.1
2.49e-30FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_176eaeb53a334fced44f289d2b0a10bfp1@uc012ekk.1
2.71e-30FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_9f16aa5101eb60b9d19aa5512cba1ffep1@ENSMUST00000103265
2.71e-30FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_9f16aa5101eb60b9d19aa5512cba1ffep1@ENSMUST00000103265
2.71e-30FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_9f16aa5101eb60b9d19aa5512cba1ffep3@uc009bpo.1, p3@uc009bpp.1
2.71e-30FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_9f16aa5101eb60b9d19aa5512cba1ffep3@uc009bpo.1, p3@uc009bpp.1
2.77e-30FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_edab2b5e7f9d9a417196f37cfafe48d2p@chr7:133512043..133512060, -
2.77e-30FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_edab2b5e7f9d9a417196f37cfafe48d2p@chr7:133512043..133512060, -
3.2e-30FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_df750dd8c72a8c49ae0594517decb629p2@uc009bpa.1
3.2e-30FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_df750dd8c72a8c49ae0594517decb629p2@uc009bpa.1
3.45e-30FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_af92e727164e468a3bda30d00743f6e7p2@Sh2d1a
3.45e-30FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_af92e727164e468a3bda30d00743f6e7p2@Sh2d1a
3.95e-30FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_09fb907181798c7bdc25840b9c09896cp5@Trat1
3.95e-30FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_09fb907181798c7bdc25840b9c09896cp5@Trat1
4.08e-30FFCP PHASE2:Mm9::chr7:137789187..137789206,+#_61d87707485f6e3b82d2d8ad9a4fa762p@chr7:137789187..137789206, +
4.08e-30FFCP PHASE1:Mm9::chr7:137789187..137789206,+#_61d87707485f6e3b82d2d8ad9a4fa762p@chr7:137789187..137789206, +
4.47e-30FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr4:125978325..125978339, -
4.47e-30FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_5b936b4cd8d41d26c1baa9eb4a568db4p8@Lat
4.47e-30FFCP PHASE1:Mm9::chr11:87627824..87627837,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr11:87627824..87627837, -
4.47e-30FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_5b936b4cd8d41d26c1baa9eb4a568db4p8@Lat
4.47e-30FFCP PHASE2:Mm9::chr11:87627824..87627837,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr11:87627824..87627837, -
4.47e-30FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_5b936b4cd8d41d26c1baa9eb4a568db4p6@uc009bpa.1
4.47e-30FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr4:125978325..125978339, -
4.47e-30FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_5b936b4cd8d41d26c1baa9eb4a568db4p6@uc009bpa.1
4.51e-30FFCP PHASE1:Mm9::chr6:41497343..41497377,+#_094255b2f66a3b7b7f8ee251bd6c58a6p@chr6:41497343..41497377, +
4.51e-30FFCP PHASE2:Mm9::chr6:41497343..41497377,+#_094255b2f66a3b7b7f8ee251bd6c58a6p@chr6:41497343..41497377, +
4.54e-30FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_926377efd4c0c43d3ae4f2cbeb539755p@chr14:54794540..54794554, +
4.54e-30FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_926377efd4c0c43d3ae4f2cbeb539755p@chr14:54794540..54794554, +
4.7e-30FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_59102399d06d06428e4f8e1a7ce62bd6p2@Gm5409
4.7e-30FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_59102399d06d06428e4f8e1a7ce62bd6p2@Gm5409

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001004&oldid=1832541"