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Coexpression cluster:C197

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Full id: C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival



Phase1 CAGE Peaks

Hg19::chr11:93754560..93754567,+p@chr11:93754560..93754567
+
Hg19::chr12:101962128..101962133,+p19@MYBPC1
Hg19::chr12:52862701..52862727,-p@chr12:52862701..52862727
-
Hg19::chr12:52867581..52867598,-p1@KRT6C
Hg19::chr12:53189894..53189905,-p1@KRT3
Hg19::chr12:57328187..57328195,-p1@SDR9C7
Hg19::chr13:103532389..103532398,+p3@METTL21CP1
Hg19::chr13:103532465..103532483,+p1@METTL21CP1
Hg19::chr13:103532691..103532727,+p@chr13:103532691..103532727
+
Hg19::chr13:103555653..103555668,+p@chr13:103555653..103555668
+
Hg19::chr13:103555674..103555696,+p@chr13:103555674..103555696
+
Hg19::chr13:103555720..103555725,+p@chr13:103555720..103555725
+
Hg19::chr16:28890820..28890826,+p@chr16:28890820..28890826
+
Hg19::chr17:10453082..10453093,-p7@MYH2
Hg19::chr17:10515218..10515226,+p@chr17:10515218..10515226
+
Hg19::chr17:39646159..39646164,-p1@KRT36
Hg19::chr17:39766130..39766139,-p@chr17:39766130..39766139
-
Hg19::chr17:7991002..7991009,-p8@ALOX12B
Hg19::chr17:7991027..7991040,-p1@ALOX12B
Hg19::chr17:7991064..7991073,-p4@ALOX12B
Hg19::chr17:7991075..7991086,-p2@ALOX12B
Hg19::chr18:28682160..28682171,-p11@DSC2
Hg19::chr18:52258473..52258477,+p1@C18orf26
Hg19::chr19:36018336..36018343,-p@chr19:36018336..36018343
-
Hg19::chr19:36591495..36591511,+p@chr19:36591495..36591511
+
Hg19::chr19:42891296..42891305,-p@chr19:42891296..42891305
-
Hg19::chr19:51563807..51563817,-p@chr19:51563807..51563817
-
Hg19::chr1:109427881..109427897,+p5@GPSM2
Hg19::chr1:152130293..152130302,-p@chr1:152130293..152130302
-
Hg19::chr1:152131703..152131706,-p1@RPTN
Hg19::chr1:152957997..152958025,+p4@SPRR1A
Hg19::chr1:153004800..153004809,+p6@SPRR1B
Hg19::chr1:153004839..153004866,+p2@SPRR1B
Hg19::chr1:153004879..153004890,+p4@SPRR1B
Hg19::chr1:153005112..153005146,+p@chr1:153005112..153005146
+
Hg19::chr1:153005159..153005205,+p@chr1:153005159..153005205
+
Hg19::chr1:153013588..153013605,-p1@SPRR2D
Hg19::chr1:153029029..153029042,-p@chr1:153029029..153029042
-
Hg19::chr1:153029980..153029995,-p1@SPRR2A
Hg19::chr1:153044083..153044088,-p1@SPRR2B
Hg19::chr1:153066998..153067008,-p1@SPRR2E
Hg19::chr1:153085984..153085999,-p1@SPRR2F
p2@SPRR2A
Hg19::chr1:153113940..153113972,-p1@SPRR2C
p2@SPRR2D
p3@SPRR2A
Hg19::chr1:153113974..153113991,-p3@SPRR2C
p4@SPRR2D
p5@SPRR2A
Hg19::chr1:153114001..153114013,-p2@SPRR2C
p3@SPRR2D
p4@SPRR2A
Hg19::chr1:153114023..153114029,-p4@SPRR2C
p5@SPRR2D
p6@SPRR2A
Hg19::chr1:153123359..153123372,-p1@SPRR2G
Hg19::chr1:153388993..153389000,+p1@S100A7A
Hg19::chr1:153430341..153430348,-p6@S100A7
Hg19::chr1:153430422..153430443,-p3@S100A7
Hg19::chr1:153431372..153431378,-p4@S100A7
Hg19::chr1:153433120..153433129,-p1@S100A7
Hg19::chr1:159832438..159832449,-p1@VSIG8
Hg19::chr1:1846607..1846616,+p6@CALML6
Hg19::chr1:1846804..1846823,+p3@CALML6
Hg19::chr20:2290823..2290833,+p@chr20:2290823..2290833
+
Hg19::chr20:2312685..2312717,+p@chr20:2312685..2312717
+
Hg19::chr20:2321399..2321407,+p@chr20:2321399..2321407
+
Hg19::chr20:43803535..43803553,+p1@PI3
Hg19::chr20:43804494..43804505,+p@chr20:43804494..43804505
+
Hg19::chr20:43804621..43804628,+p@chr20:43804621..43804628
+
Hg19::chr20:43804675..43804691,+p@chr20:43804675..43804691
+
Hg19::chr21:31768348..31768356,+p1@KRTAP13-1
Hg19::chr21:45743612..45743625,+p@chr21:45743612..45743625
+
Hg19::chr2:106128079..106128106,+p@chr2:106128079..106128106
+
Hg19::chr2:113816771..113816777,+p1@IL36RN
Hg19::chr3:133348367..133348368,-p@chr3:133348367..133348368
-
Hg19::chr3:46027166..46027193,-p@chr3:46027166..46027193
-
Hg19::chr3:57286665..57286681,+p@chr3:57286665..57286681
+
Hg19::chr3:57326704..57326721,-p1@ASB14
Hg19::chr4:68749705..68749725,-p1@TMPRSS11D
Hg19::chr4:68749745..68749756,-p2@TMPRSS11D
Hg19::chr5:147715119..147715124,+p1@SPINK9
Hg19::chr5:150040771..150040781,+p7@MYOZ3
Hg19::chr6:2744269..2744281,-p@chr6:2744269..2744281
-
Hg19::chr6:2744361..2744382,-p@chr6:2744361..2744382
-
Hg19::chr6:2744431..2744440,-p@chr6:2744431..2744440
-
Hg19::chr6:2751146..2751162,-p1@MYLK4
Hg19::chr7:141066909..141066949,+p@chr7:141066909..141066949
+
Hg19::chr7:46064019..46064047,-p@chr7:46064019..46064047
-
Hg19::chr7:80412875..80412912,-p@chr7:80412875..80412912
-
Hg19::chr8:143866581..143866589,-p@chr8:143866581..143866589
-
Hg19::chr8:143866652..143866665,-p@chr8:143866652..143866665
-
Hg19::chr9:136184568..136184572,+p1@LCN1P2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


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