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Coexpression cluster:C57

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Full id: C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural



Phase1 CAGE Peaks

Hg19::chr10:103880002..103880070,-p4@LDB1
Hg19::chr10:11207401..11207410,+p10@CELF2
Hg19::chr10:11207415..11207422,+p7@CELF2
Hg19::chr10:112631976..112632038,-p1@ENST00000420367
Hg19::chr10:26727088..26727109,+p7@APBB1IP
Hg19::chr10:26727647..26727722,+p2@APBB1IP
Hg19::chr11:108093656..108093698,+p3@ATM
Hg19::chr11:108093699..108093710,+p7@ATM
Hg19::chr11:108094132..108094180,+p4@ATM
Hg19::chr11:118095718..118095753,-p1@AMICA1
Hg19::chr11:128563948..128564003,+p1@FLI1
Hg19::chr11:3875828..3875866,+p1@ENST00000430222
Hg19::chr11:3877214..3877237,+p1@MIR4687
Hg19::chr11:64107610..64107648,-p@chr11:64107610..64107648
-
Hg19::chr11:64107663..64107703,+p1@CCDC88B
Hg19::chr11:64107705..64107718,+p2@CCDC88B
Hg19::chr11:64511575..64511629,-p1@RASGRP2
Hg19::chr11:64511908..64511923,-p13@RASGRP2
Hg19::chr11:64578188..64578223,-p3@MEN1
Hg19::chr11:65150103..65150148,-p1@SLC25A45
Hg19::chr11:65405556..65405623,+p1@SIPA1
Hg19::chr11:65407251..65407280,+p7@SIPA1
Hg19::chr11:65837549..65837593,+p3@PACS1
Hg19::chr11:66610804..66610835,-p1@CU688443
Hg19::chr11:67171358..67171385,+p2@TBC1D10C
Hg19::chr11:67171391..67171468,+p1@TBC1D10C
Hg19::chr11:67171471..67171484,+p5@TBC1D10C
Hg19::chr11:67203349..67203358,-p1@ENST00000535922
Hg19::chr11:67203630..67203643,-p2@PTPRCAP
Hg19::chr11:67204754..67204767,+p@chr11:67204754..67204767
+
Hg19::chr11:67204769..67204797,+p@chr11:67204769..67204797
+
Hg19::chr11:67205141..67205160,-p1@PTPRCAP
Hg19::chr11:67205245..67205270,+p@chr11:67205245..67205270
+
Hg19::chr11:6767644..6767655,-p2@GVINP1
Hg19::chr11:6767657..6767736,-p1@GVINP1
Hg19::chr11:72525425..72525486,+p1@ATG16L2
Hg19::chr12:109491750..109491794,-p1@LOC100131733
Hg19::chr12:110434073..110434090,-p5@GIT2
Hg19::chr12:110434100..110434139,-p2@GIT2
Hg19::chr12:118797475..118797527,-p3@TAOK3
Hg19::chr12:15114492..15114565,-p1@ARHGDIB
Hg19::chr12:47610202..47610253,-p1@LOC100233209
Hg19::chr12:51717922..51717943,-p2@BIN2
Hg19::chr12:56326402..56326424,-p5@WIBG
Hg19::chr12:57871162..57871177,+p@chr12:57871162..57871177
+
Hg19::chr12:57871591..57871612,-p3@ARHGAP9
Hg19::chr12:57871620..57871659,-p1@ARHGAP9
Hg19::chr12:57871661..57871676,-p5@ARHGAP9
Hg19::chr12:57871853..57871879,-p6@ARHGAP9
Hg19::chr12:58135903..58135974,-p1@AGAP2
Hg19::chr13:114898016..114898113,-p1@RASA3
Hg19::chr14:58740722..58740736,-p1@ENST00000556225
Hg19::chr14:86400995..86401031,+p2@ENST00000557195
Hg19::chr14:86401039..86401083,+p1@ENST00000557195
Hg19::chr14:91581011..91581044,+p6@C14orf159
Hg19::chr14:91883897..91883910,-p6@CCDC88C
Hg19::chr14:91883918..91883957,-p3@CCDC88C
Hg19::chr14:91884129..91884141,-p2@CCDC88C
Hg19::chr14:93117860..93117876,+p9@RIN3
Hg19::chr14:93117883..93117929,+p2@RIN3
Hg19::chr15:40600115..40600166,-p1@PLCB2
Hg19::chr15:75074839..75074866,+p4@CSK
Hg19::chr15:77287457..77287487,+p1@PSTPIP1
Hg19::chr15:77287491..77287507,+p4@PSTPIP1
Hg19::chr15:81589254..81589272,+p2@IL16
Hg19::chr15:81589277..81589337,+p1@IL16
Hg19::chr15:86233140..86233178,+p2@AKAP13
Hg19::chr15:93458175..93458196,+p@chr15:93458175..93458196
+
Hg19::chr16:29756562..29756583,+p1@ENST00000501801
p1@uc002dtq.1
Hg19::chr16:29757272..29757347,-p1@C16orf54
Hg19::chr16:29757348..29757359,-p3@C16orf54
Hg19::chr16:29757389..29757400,-p2@C16orf54
Hg19::chr16:30483962..30484018,+p2@ITGAL
Hg19::chr16:30484021..30484047,+p3@ITGAL
Hg19::chr16:3313774..3313790,+p1@FLJ39639
Hg19::chr16:3313791..3313834,+p2@ZNF263
Hg19::chr16:3627360..3627373,-p2@NLRC3
Hg19::chr16:3627377..3627431,-p1@NLRC3
Hg19::chr16:50300440..50300485,+p1@ADCY7
Hg19::chr16:53468342..53468414,+p1@RBL2
Hg19::chr16:58033455..58033483,+p@chr16:58033455..58033483
+
Hg19::chr16:66586461..66586567,+p1@CKLF-CMTM1
p1@CKLF
Hg19::chr16:67679007..67679059,+p3@RLTPR
Hg19::chr16:68033371..68033398,-p1@DPEP2
Hg19::chr16:68320188..68320208,-p@chr16:68320188..68320208
-
Hg19::chr16:88770019..88770033,-p3@RNF166
Hg19::chr16:88772761..88772839,-p1@RNF166
Hg19::chr16:89787937..89787971,+p1@ZNF276
Hg19::chr16:89788671..89788686,+p1@AF354755
p1@AF354756
Hg19::chr16:89788687..89788698,+p2@AF354755
p2@AF354756
Hg19::chr17:2699697..2699769,+p1@RAP1GAP2
Hg19::chr17:28088355..28088367,-p4@SSH2
Hg19::chr17:38020481..38020506,-p7@IKZF3
Hg19::chr17:3867722..3867748,-p1@ATP2A3
Hg19::chr17:3867752..3867764,-p2@ATP2A3
Hg19::chr17:3867766..3867778,-p3@ATP2A3
Hg19::chr17:43299130..43299151,-p1@ENST00000498986
p1@uc002iil.3
Hg19::chr17:43299168..43299177,-p2@ENST00000498986
p2@uc002iil.3
Hg19::chr17:43487780..43487792,-p5@ARHGAP27
Hg19::chr17:43487793..43487803,-p8@ARHGAP27
Hg19::chr17:4843654..4843674,+p10@RNF167
Hg19::chr17:4843679..4843703,+p5@RNF167
Hg19::chr17:54910566..54910612,+p@chr17:54910566..54910612
+
Hg19::chr17:56409871..56409890,-p1@AX721088
Hg19::chr17:56414556..56414572,+p1@LOC100506779
Hg19::chr17:56414584..56414610,+p1@uc002ivz.2
p1@uc010dcv.1
Hg19::chr17:56414635..56414648,+p3@uc002iwa.2
p3@uc002iwb.2
p3@uc002iwc.2
Hg19::chr17:56414657..56414675,+p2@uc002iwa.2
p2@uc002iwb.2
p2@uc002iwc.2
Hg19::chr17:56414688..56414711,+p1@uc002iwa.2
p1@uc002iwb.2
p1@uc002iwc.2
Hg19::chr17:61777459..61777502,-p1@LIMD2
Hg19::chr17:7239821..7239902,+p1@ACAP1
Hg19::chr17:7239904..7239915,+p2@ACAP1
Hg19::chr17:75369167..75369178,+p17@SEPT9
Hg19::chr17:75447533..75447595,+p3@SEPT9
Hg19::chr17:75450099..75450128,+p13@SEPT9
Hg19::chr17:76126828..76126839,+p3@TMC8
Hg19::chr17:76126842..76126896,+p1@TMC8
Hg19::chr17:76128159..76128188,-p@chr17:76128159..76128188
-
Hg19::chr17:76778339..76778413,-p1@CYTH1
Hg19::chr17:80817460..80817512,+p@chr17:80817460..80817512
+
Hg19::chr18:11908297..11908323,-p1@MPPE1
Hg19::chr18:2636728..2636753,-p@chr18:2636728..2636753
-
Hg19::chr18:29598769..29598776,+p3@RNF125
Hg19::chr18:5295679..5295734,-p2@ZFP161
Hg19::chr18:72166564..72166620,+p5@CNDP2
Hg19::chr19:10450287..10450324,-p1@ICAM3
Hg19::chr19:10450328..10450351,-p2@ICAM3
Hg19::chr19:1066984..1067041,+p3@HMHA1
Hg19::chr19:1067144..1067190,+p2@HMHA1
Hg19::chr19:1067256..1067270,+p4@HMHA1
Hg19::chr19:1067271..1067335,+p1@HMHA1
Hg19::chr19:1067342..1067353,+p8@HMHA1
Hg19::chr19:10714098..10714112,-p@chr19:10714098..10714112
-
Hg19::chr19:14492217..14492241,+p2@CD97
Hg19::chr19:14551066..14551097,+p2@PKN1
Hg19::chr19:15575340..15575367,-p1@RASAL3
Hg19::chr19:15575369..15575386,-p2@RASAL3
Hg19::chr19:17862274..17862335,+p2@FCHO1
Hg19::chr19:17958771..17958829,-p1@JAK3
Hg19::chr19:17958832..17958861,-p2@JAK3
Hg19::chr19:18111927..18111988,+p2@ARRDC2
Hg19::chr19:18197714..18197750,-p1@IL12RB1
Hg19::chr19:18197799..18197815,-p2@IL12RB1
Hg19::chr19:18414444..18414500,+p@chr19:18414444..18414500
+
Hg19::chr19:1942102..1942130,-p@chr19:1942102..1942130
-
Hg19::chr19:19887364..19887438,+p@chr19:19887364..19887438
+
Hg19::chr19:3178754..3178779,+p1@S1PR4
Hg19::chr19:36235552..36235619,-p2@U2AF1L4
Hg19::chr19:36393354..36393363,+p4@HCST
Hg19::chr19:36393367..36393387,+p3@HCST
Hg19::chr19:36393388..36393421,+p2@HCST
Hg19::chr19:36393422..36393439,+p1@HCST
Hg19::chr19:39826639..39826719,-p1@GMFG
Hg19::chr19:42061692..42061699,+p@chr19:42061692..42061699
+
Hg19::chr19:42387240..42387310,+p1@ARHGEF1
Hg19::chr19:4916794..4916840,-p1@AK097879
Hg19::chr19:49838878..49838904,-p@chr19:49838878..49838904
-
Hg19::chr19:6481759..6481771,-p2@DENND1C
Hg19::chr19:6481776..6481815,-p1@DENND1C
Hg19::chr1:111217410..111217472,-p2@KCNA3
Hg19::chr1:151032040..151032115,-p1@CDC42SE1
Hg19::chr1:160492994..160493057,-p1@SLAMF6
Hg19::chr1:160493058..160493069,-p2@SLAMF6
Hg19::chr1:160765947..160765976,+p1@LY9
Hg19::chr1:161039647..161039744,-p1@ARHGAP30
Hg19::chr1:169680745..169680771,-p1@SELL
Hg19::chr1:1711945..1711970,-p6@NADK
Hg19::chr1:179851893..179851995,+p1@TOR1AIP1
Hg19::chr1:209929388..209929412,+p3@TRAF3IP3
Hg19::chr1:209929446..209929490,+p1@TRAF3IP3
Hg19::chr1:209929494..209929523,+p5@TRAF3IP3
Hg19::chr1:209941889..209941928,+p2@TRAF3IP3
Hg19::chr1:26872304..26872315,+p4@RPS6KA1
Hg19::chr1:27668505..27668582,+p1@SYTL1
Hg19::chr1:39680895..39680915,+p7@MACF1
Hg19::chr1:39680927..39680954,+p2@MACF1
Hg19::chr1:53098820..53098860,+p1@FAM159A
Hg19::chr1:84609944..84609964,+p3@PRKACB
Hg19::chr1:84609965..84610025,+p2@PRKACB
Hg19::chr1:84610949..84610971,+p@chr1:84610949..84610971
+
Hg19::chr1:9711781..9711813,+p1@PIK3CD
Hg19::chr1:9711821..9711832,+p2@PIK3CD
Hg19::chr1:9712538..9712576,-p@chr1:9712538..9712576
-
Hg19::chr20:25039008..25039028,-p3@ACSS1
Hg19::chr20:34078776..34078819,-p1@ENST00000453914
Hg19::chr20:34078866..34078891,+p@chr20:34078866..34078891
+
Hg19::chr20:34078894..34078909,+p@chr20:34078894..34078909
+
Hg19::chr20:35274548..35274622,-p1@SLA2
Hg19::chr20:45318230..45318303,-p2@TP53RK
Hg19::chr20:56195525..56195556,-p2@ZBP1
Hg19::chr21:38739289..38739363,+p2@DYRK1A
Hg19::chr21:43346790..43346823,-p4@C2CD2
Hg19::chr21:45559983..45560006,+p@chr21:45559983..45560006
+
Hg19::chr22:24551765..24551817,+p5@CABIN1
Hg19::chr22:24823491..24823509,-p@chr22:24823491..24823509
-
Hg19::chr22:27068766..27068794,+p1@ENST00000435162
p1@ENST00000437071
p1@ENST00000440816
Hg19::chr22:27068859..27068915,+p3@MIAT
Hg19::chr22:31892159..31892189,+p2@SFI1
Hg19::chr22:36556821..36556864,-p2@APOL3
Hg19::chr22:38073284..38073329,-p@chr22:38073284..38073329
-
Hg19::chr22:39147797..39147812,-p15@SUN2
Hg19::chr22:39150947..39150977,-p4@SUN2
Hg19::chr22:39540626..39540653,+p@chr22:39540626..39540653
+
Hg19::chr22:50628999..50629023,+p2@TRABD
Hg19::chr22:50629033..50629048,+p3@TRABD
Hg19::chr2:113931513..113931583,+p1@PSD4
Hg19::chr2:127839445..127839462,-p5@BIN1
Hg19::chr2:131129793..131129812,+p1@PTPN18
Hg19::chr2:143886877..143886888,+p5@ARHGAP15
Hg19::chr2:143886890..143886904,+p4@ARHGAP15
Hg19::chr2:143886909..143886922,+p2@ARHGAP15
Hg19::chr2:143886927..143886938,+p3@ARHGAP15
Hg19::chr2:143886949..143886997,+p1@ARHGAP15
Hg19::chr2:175462523..175462539,-p2@WIPF1
Hg19::chr2:182321734..182321748,+p11@ITGA4
Hg19::chr2:198174475..198174519,+p@chr2:198174475..198174519
+
Hg19::chr2:198175375..198175440,-p2@ANKRD44
Hg19::chr2:198175527..198175542,-p4@ANKRD44
Hg19::chr2:198175544..198175567,-p3@ANKRD44
Hg19::chr2:202098203..202098256,+p3@CASP8
Hg19::chr2:202125162..202125180,-p@chr2:202125162..202125180
-
Hg19::chr2:202125219..202125230,+p9@CASP8
Hg19::chr2:202125233..202125266,+p4@CASP8
Hg19::chr2:202125267..202125292,+p1@CASP8
Hg19::chr2:233925038..233925062,+p1@INPP5D
Hg19::chr2:233925064..233925090,+p2@INPP5D
Hg19::chr2:30455229..30455276,+p3@LBH
Hg19::chr2:43446411..43446479,+p@chr2:43446411..43446479
+
Hg19::chr2:45795145..45795174,-p3@SRBD1
Hg19::chr2:70322412..70322438,-p1@ENST00000424748
Hg19::chr2:85555061..85555081,-p2@TGOLN2
Hg19::chr3:113251358..113251423,+p1@SIDT1
Hg19::chr3:130745571..130745677,-p1@ASTE1
Hg19::chr3:16926441..16926463,+p2@PLCL2
Hg19::chr3:16926484..16926502,+p1@PLCL2
Hg19::chr3:195163803..195163826,-p2@ACAP2
Hg19::chr3:48520915..48520952,-p11@SHISA5
Hg19::chr3:52279908..52279919,+p3@PPM1M
Hg19::chr3:52321827..52321859,+p1@GLYCTK
Hg19::chr4:153457523..153457575,+p1@MIR4453
Hg19::chr4:15683260..15683337,+p4@FAM200B
Hg19::chr4:1725231..1725273,+p2@TACC3
Hg19::chr4:37892682..37892757,+p2@TBC1D1
Hg19::chr5:118604439..118604502,+p1@TNFAIP8
Hg19::chr5:131746575..131746682,+p1@C5orf56
Hg19::chr5:169064245..169064303,+p1@DOCK2
Hg19::chr5:171615315..171615383,-p2@STK10
Hg19::chr5:175963588..175963604,-p11@RNF44
Hg19::chr5:175963631..175963657,-p4@RNF44
Hg19::chr5:175964366..175964429,-p2@RNF44
Hg19::chr5:175968683..175968713,+p@chr5:175968683..175968713
+
Hg19::chr5:176797664..176797668,+p6@RGS14
Hg19::chr5:176853669..176853701,+p1@GRK6
Hg19::chr5:42992912..42992938,-p4@uc003jnb.1
Hg19::chr5:42992944..42992958,-p7@uc003jnb.1
Hg19::chr5:43040442..43040486,-p2@C5orf39
Hg19::chr6:144665273..144665349,+p1@UTRN
Hg19::chr6:159463364..159463398,-p4@TAGAP
Hg19::chr6:26365404..26365440,+p2@BTN3A2
Hg19::chr6:26365443..26365493,+p1@BTN3A2
Hg19::chr6:26402472..26402512,+p1@BTN3A1
Hg19::chr6:26440710..26440788,+p1@BTN3A3
Hg19::chr6:26458152..26458164,+p2@BTN2A1
Hg19::chr6:30029008..30029055,+p2@ZNRD1
Hg19::chr6:32160622..32160719,-p2@GPSM3
Hg19::chr6:32821599..32821615,-p4@TAP1
Hg19::chr6:35265586..35265641,+p1@DEF6
Hg19::chr6:42531930..42531953,+p3@UBR2
Hg19::chr6:42714708..42714748,+p2@KIAA0240
Hg19::chr7:100183742..100183781,-p1@LRCH4
Hg19::chr7:142495131..142495159,+p1@TRBJ2-7
Hg19::chr7:150382781..150382815,+p1@GIMAP1
p1@GIMAP2
Hg19::chr7:150382818..150382821,+p2@GIMAP2
Hg19::chr7:44613618..44613631,+p@chr7:44613618..44613631
+
Hg19::chr7:50343478..50343494,+p9@IKZF1
Hg19::chr7:50343510..50343521,+p11@IKZF1
Hg19::chr7:50343536..50343545,+p12@IKZF1
Hg19::chr7:50343634..50343717,+p2@IKZF1
Hg19::chr7:50344144..50344157,+p6@IKZF1
Hg19::chr7:644239..644302,+p@chr7:644239..644302
+
Hg19::chr7:86849025..86849059,-p1@C7orf23
Hg19::chr8:133772856..133772863,-p3@TMEM71
Hg19::chr8:134511563..134511586,-p5@ST3GAL1
Hg19::chr8:23101142..23101156,+p2@CHMP7
Hg19::chr8:38644957..38645020,+p4@TACC1
Hg19::chr8:71564073..71564104,+p@chr8:71564073..71564104
+
Hg19::chr9:117150254..117150271,-p1@AKNA
Hg19::chr9:117150303..117150312,-p3@AKNA
Hg19::chr9:117160738..117160782,-p2@AKNA
Hg19::chr9:123691281..123691362,-p2@TRAF1
Hg19::chr9:130541017..130541032,-p6@SH2D3C
Hg19::chr9:134145898..134145952,-p4@FAM78A
Hg19::chr9:2017676..2017700,+p@chr9:2017676..2017700
+
Hg19::chr9:272886..272918,+p6@DOCK8
Hg19::chr9:272921..272937,+p8@DOCK8
Hg19::chr9:273026..273037,+p5@DOCK8
Hg19::chr9:273038..273076,+p2@DOCK8
Hg19::chr9:32526299..32526346,-p2@DDX58
Hg19::chr9:91992875..91992889,-p@chr9:91992875..91992889
-
Hg19::chr9:92112972..92113048,-p1@SEMA4D
Hg19::chr9:98638233..98638306,-p1@LINC00476
Hg19::chrX:10066426..10066458,+p2@WWC3
Hg19::chrX:117629595..117629640,+p2@DOCK11
Hg19::chrX:118827113..118827140,-p1@SEPT6
Hg19::chrX:128913906..128913957,+p1@SASH3
Hg19::chrX:129220847..129220883,-p@chrX:129220847..129220883
-
Hg19::chrX:129220902..129220913,-p@chrX:129220902..129220913
-
Hg19::chrX:153192292..153192326,-p4@ARHGAP4
Hg19::chrX:70331410..70331436,-p1@IL2RG
Hg19::chrX:70418030..70418054,-p1@ENST00000450860


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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