Personal tools

Coexpression cluster:C138

From FANTOM5_SSTAR

Revision as of 16:24, 18 May 2012 by Autoedit (talk | contribs) (Created page with "{{Coexpression_clusters |full_id=C138_diffuse_Burkitt_lymphangiectasia_lymphoma_acute_CD19_pineal |id=C138 }}")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Full id: C138_diffuse_Burkitt_lymphangiectasia_lymphoma_acute_CD19_pineal



Phase1 CAGE Peaks

Hg19::chr10:560037..560049,-p@chr10:560037..560049
-
Hg19::chr11:111224906..111224920,-p@chr11:111224906..111224920
-
Hg19::chr11:111229505..111229516,-p@chr11:111229505..111229516
-
Hg19::chr11:2407318..2407325,+p24@CD81
Hg19::chr11:2407761..2407778,+p26@CD81
Hg19::chr11:26122006..26122011,-p@chr11:26122006..26122011
-
Hg19::chr11:26124040..26124064,-p@chr11:26124040..26124064
-
Hg19::chr12:113494494..113494505,+p4@DTX1
Hg19::chr12:113494516..113494577,+p1@DTX1
Hg19::chr12:113495162..113495172,+p11@DTX1
Hg19::chr12:113495245..113495253,+p5@DTX1
Hg19::chr12:113495715..113495725,+p8@DTX1
Hg19::chr12:113496099..113496108,+p3@AB384763
Hg19::chr12:113496125..113496146,+p1@AB384763
Hg19::chr12:113533128..113533138,+p@chr12:113533128..113533138
+
Hg19::chr12:117256221..117256231,+p@chr12:117256221..117256231
+
Hg19::chr12:117256250..117256271,+p@chr12:117256250..117256271
+
Hg19::chr12:117256273..117256285,+p@chr12:117256273..117256285
+
Hg19::chr12:11905315..11905321,+p30@ETV6
Hg19::chr12:11905335..11905342,+p28@ETV6
Hg19::chr12:122435304..122435308,-p@chr12:122435304..122435308
-
Hg19::chr12:122458855..122458857,+p16@BCL7A
Hg19::chr12:122459183..122459198,+p10@BCL7A
Hg19::chr12:122459199..122459208,+p13@BCL7A
Hg19::chr12:122462311..122462330,-p@chr12:122462311..122462330
-
Hg19::chr12:122462770..122462775,+p@chr12:122462770..122462775
+
Hg19::chr12:2296602..2296621,+p@chr12:2296602..2296621
+
Hg19::chr12:4313305..4313315,+p@chr12:4313305..4313315
+
Hg19::chr12:4313331..4313334,+p@chr12:4313331..4313334
+
Hg19::chr12:8808206..8808209,-p@chr12:8808206..8808209
-
Hg19::chr12:94551874..94551884,+p16@PLXNC1
Hg19::chr13:103821459..103821470,+p@chr13:103821459..103821470
+
Hg19::chr13:61236926..61236943,+p@chr13:61236926..61236943
+
Hg19::chr14:106332392..106332397,-p@chr14:106332392..106332397
-
Hg19::chr14:106332402..106332439,-p@chr14:106332402..106332439
-
Hg19::chr14:106332443..106332451,-p@chr14:106332443..106332451
-
Hg19::chr14:106332453..106332464,-p@chr14:106332453..106332464
-
Hg19::chr14:106332480..106332490,-p@chr14:106332480..106332490
-
Hg19::chr14:106332501..106332515,-p@chr14:106332501..106332515
-
Hg19::chr14:106332518..106332527,-p@chr14:106332518..106332527
-
Hg19::chr14:106332629..106332637,-p@chr14:106332629..106332637
-
Hg19::chr14:33433362..33433367,-p@chr14:33433362..33433367
-
Hg19::chr14:33449602..33449615,-p@chr14:33449602..33449615
-
Hg19::chr14:53594794..53594799,+p@chr14:53594794..53594799
+
Hg19::chr14:75906948..75906962,+p@chr14:75906948..75906962
+
Hg19::chr14:91750002..91750014,-p21@CCDC88C
Hg19::chr14:96152757..96152769,+p1@TCL1B
Hg19::chr14:96181789..96181822,+p1@ENST00000556386
p1@uc001yfd.1
Hg19::chr14:96181832..96181839,+p2@uc001yfd.1
Hg19::chr14:96184093..96184099,+p@chr14:96184093..96184099
+
Hg19::chr15:66446160..66446166,-p@chr15:66446160..66446166
-
Hg19::chr15:66446174..66446184,-p@chr15:66446174..66446184
-
Hg19::chr15:66446191..66446202,-p@chr15:66446191..66446202
-
Hg19::chr15:66464730..66464736,-p@chr15:66464730..66464736
-
Hg19::chr15:67841330..67841348,+p4@MAP2K5
Hg19::chr15:84653070..84653073,+p@chr15:84653070..84653073
+
Hg19::chr16:86604624..86604648,+p@chr16:86604624..86604648
+
Hg19::chr16:87098907..87098937,-p@chr16:87098907..87098937
-
Hg19::chr17:3123719..3123724,-p@chr17:3123719..3123724
-
Hg19::chr17:74846230..74846245,+p1@uc002jtf.2
Hg19::chr17:74965032..74965049,-p@chr17:74965032..74965049
-
Hg19::chr17:74965255..74965298,-p1@AK123869
Hg19::chr18:3174522..3174533,-p@chr18:3174522..3174533
-
Hg19::chr18:71693057..71693059,-p@chr18:71693057..71693059
-
Hg19::chr18:71733441..71733451,-p@chr18:71733441..71733451
-
Hg19::chr19:29097532..29097550,+p@chr19:29097532..29097550
+
Hg19::chr19:29098223..29098234,+p@chr19:29098223..29098234
+
Hg19::chr1:160414041..160414045,-p@chr1:160414041..160414045
-
Hg19::chr1:167666666..167666680,+p4@RCSD1
Hg19::chr1:171125500..171125502,-p@chr1:171125500..171125502
-
Hg19::chr1:178636283..178636287,+p@chr1:178636283..178636287
+
Hg19::chr22:23234780..23234786,+p@chr22:23234780..23234786
+
Hg19::chr22:23235755..23235760,+p@chr22:23235755..23235760
+
Hg19::chr22:23235843..23235863,+p1@IGLJ1
Hg19::chr22:23235880..23235915,+p2@AK097035
Hg19::chr22:23235933..23235972,+p1@AK097035
Hg19::chr2:198220285..198220289,-p@chr2:198220285..198220289
-
Hg19::chr2:198220897..198220904,-p@chr2:198220897..198220904
-
Hg19::chr2:89162159..89162169,-p@chr2:89162159..89162169
-
Hg19::chr2:98534317..98534328,-p@chr2:98534317..98534328
-
Hg19::chr3:153480361..153480373,-p1@ENST00000493214
Hg19::chr3:19436672..19436686,+p@chr3:19436672..19436686
+
Hg19::chr3:62809350..62809370,+p@chr3:62809350..62809370
+
Hg19::chr3:77626663..77626683,+p@chr3:77626663..77626683
+
Hg19::chr4:176346295..176346296,-p@chr4:176346295..176346296
-
Hg19::chr4:176353908..176353917,-p@chr4:176353908..176353917
-
Hg19::chr4:176358284..176358287,-p@chr4:176358284..176358287
-
Hg19::chr4:71532616..71532662,-p5@IGJ
Hg19::chr4:8046897..8046900,+p@chr4:8046897..8046900
+
Hg19::chr4:8046990..8046993,-p@chr4:8046990..8046993
-
Hg19::chr4:86525299..86525314,+p27@ARHGAP24
Hg19::chr4:86525321..86525343,+p19@ARHGAP24
Hg19::chr4:86525345..86525360,+p17@ARHGAP24
Hg19::chr5:118755330..118755335,+p@chr5:118755330..118755335
+
Hg19::chr6:184352..184384,-p@chr6:184352..184384
-
Hg19::chr6:26220614..26220622,-p@chr6:26220614..26220622
-
Hg19::chr6:39962285..39962290,+p@chr6:39962285..39962290
+
Hg19::chr6:39962295..39962305,+p@chr6:39962295..39962305
+
Hg19::chr6:39962337..39962342,+p@chr6:39962337..39962342
+
Hg19::chr6:89324309..89324332,-p@chr6:89324309..89324332
-
Hg19::chr6:89324350..89324357,-p@chr6:89324350..89324357
-
Hg19::chr7:44140835..44140864,+p@chr7:44140835..44140864
+
Hg19::chr7:47131937..47131939,-p@chr7:47131937..47131939
-
Hg19::chr7:47143537..47143540,-p@chr7:47143537..47143540
-
Hg19::chr7:47143563..47143572,-p@chr7:47143563..47143572
-
Hg19::chr7:47225953..47225964,-p@chr7:47225953..47225964
-
Hg19::chr7:47225965..47225970,-p@chr7:47225965..47225970
-
Hg19::chr7:47226019..47226026,-p@chr7:47226019..47226026
-
Hg19::chr7:47226094..47226108,-p@chr7:47226094..47226108
-
Hg19::chr8:103211732..103211741,-p@chr8:103211732..103211741
-
Hg19::chr8:54811712..54811719,+p1@ENST00000508149
Hg19::chr8:9577966..9577972,+p26@TNKS
Hg19::chr8:9577986..9578004,+p12@TNKS
Hg19::chr8:9578005..9578014,+p22@TNKS
Hg19::chr9:120707790..120707797,-p@chr9:120707790..120707797
-
Hg19::chr9:120707817..120707824,-p@chr9:120707817..120707824
-
Hg19::chr9:138904824..138904829,+p@chr9:138904824..138904829
+
Hg19::chr9:71805723..71805737,+p@chr9:71805723..71805737
+
Hg19::chr9:96029287..96029296,+p15@WNK2
Hg19::chr9:96029313..96029322,+p9@WNK2
Hg19::chr9:96030923..96030932,-p@chr9:96030923..96030932
-
Hg19::chr9:96030936..96030946,-p@chr9:96030936..96030946
-
Hg19::chr9:96059957..96059996,+p@chr9:96059957..96059996
+
Hg19::chrX:42727011..42727017,-p@chrX:42727011..42727017
-
Hg19::chrX:42727038..42727047,-p@chrX:42727038..42727047
-
Hg19::chrX:42727059..42727068,-p@chrX:42727059..42727068
-
Hg19::chrX:47051618..47051644,+p@chrX:47051618..47051644
+
Hg19::chrX:47051652..47051664,+p@chrX:47051652..47051664
+
Hg19::chrX:89012355..89012363,+p@chrX:89012355..89012363
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C138&oldid=1698144"