EntrezGene:19822

Symbol:	Rnf4
Description:	ring finger protein 4
Synonyms:	AU018689, Gtrgeo8
Species:	Mouse (Mus musculus)
Xrefs:	EntrezGene:19822 MGI:1201691 Ensembl:ENSMUSG00000029110
Associated motifs:	NA
Transcripton Factor?:	No

TSS regions

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Mm9::chr5:34679033..34679044,+	p2@Rnf4
Mm9::chr5:34679050..34679108,+	p1@Rnf4
Mm9::chr5:34679577..34679586,+	p5@Rnf4
Mm9::chr5:34679601..34679608,+	p6@Rnf4
Mm9::chr5:34679613..34679665,+	p3@Rnf4

View on UCSC genome browser

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TSS expression

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Sample	p1@Rnf4	p2@Rnf4	p3@Rnf4	p5@Rnf4
Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G7	0.00	0.00	0.00	0.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I5	44.32	4.89	0.00	0.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I6	35.94	2.73	0.00	0.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I3	32.06	2.42	0.60	0.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I4	29.05	1.50	0.00	0.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I7	48.52	2.35	0.34	0.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I8	51.16	2.80	0.23	0.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E9	75.02	1.42	0.39	0.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E7	230.47	3.38	2.25	0.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F2	197.55	0.94	2.11	0.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E6	149.30	3.08	1.54	0.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F1	142.95	2.71	1.68	0.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E4	86.97	3.42	1.54	0.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E8	88.03	1.92	1.14	0.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A1	55.63	2.66	0.00	0.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A3	70.66	4.45	0.00	0.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A5	67.86	7.70	0.00	0.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A2	71.14	1.26	0.16	0.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A4	75.28	1.10	0.00	0.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A6	61.11	2.55	0.00	0.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A3	49.92	2.13	43.46	2.89
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H2	87.87	2.98	0.89	0.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I9	103.44	2.35	1.57	0.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D1	64.96	3.20	0.00	0.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D2	61.48	2.52	0.00	0.00
GP2+ M cell, pool1.CNhs13228.11845-124H9	37.90	2.87	0.00	0.00
GP2+ M cell, pool2.CNhs13231.11846-124I1	45.23	3.02	0.00	0.00
GP2+ M cell, pool3.CNhs13240.11847-124I2	56.67	2.80	0.43	0.43
Ileum epithelium, pool1.CNhs13199.10252-104B9	53.97	2.47	0.00	0.19
Ileum epithelium, pool2.CNhs13232.10253-104C1	50.66	2.52	0.00	0.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C8	56.10	3.33	0.22	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I3	89.54	3.18	1.27	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G6	76.88	3.08	1.85	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E9	31.70	0.00	0.00	0.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F5	62.39	3.76	2.31	0.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F6	73.97	3.32	0.83	0.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F7	66.76	4.29	0.82	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G8	90.82	3.35	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H1	75.01	4.69	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H3	88.48	2.09	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G9	91.76	1.76	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H2	84.70	6.15	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H4	70.40	4.37	0.49	0.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D8	78.81	2.39	0.25	0.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D9	72.08	2.03	0.20	0.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B3	82.96	2.94	0.37	0.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B7	16.43	1.56	0.78	0.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C2	32.49	1.74	0.44	0.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B8	33.83	2.20	0.44	0.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C3	40.64	1.94	0.19	0.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C4	35.56	1.82	0.14	0.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C4	21.56	0.00	0.00	0.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A2	111.74	2.18	0.67	0.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I9	101.55	2.18	0.73	0.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A1	104.86	2.69	0.67	0.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C1	58.40	1.80	0.26	0.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E1	49.28	0.29	0.57	0.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C5	58.79	1.55	0.00	0.52
Mouse Granule cells, donor1.CNhs12131.11713-123C3	43.90	1.62	0.20	0.00
Mouse Granule cells, donor2.CNhs12357.11731-123E3	41.26	2.64	0.53	0.00
Mouse Granule cells, donor3.CNhs12108.11636-122C7	36.76	1.27	0.63	0.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C6	28.80	2.37	0.00	0.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D1	32.01	0.00	0.89	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C7	22.05	0.90	0.45	0.45
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E7	14.83	0.99	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D2	21.31	0.71	0.00	0.00
Mouse Microglia, donor1.CNhs12629.11718-123C8	22.47	0.60	0.30	0.00
Mouse Microglia, donor2.CNhs12634.11736-123E8	19.21	0.38	0.38	0.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D5	51.22	2.07	0.31	0.00
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F5	50.76	1.76	0.14	0.00
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D9	53.63	2.31	0.00	0.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F1	37.13	1.14	0.00	0.29
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D5	39.76	1.55	0.22	0.22
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D2	59.78	2.20	0.37	0.00
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F2	69.58	2.88	0.00	0.00
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D6	56.07	0.00	0.00	0.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D3	35.24	0.00	0.00	0.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3	43.80	1.79	0.00	0.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D7	48.85	2.46	0.15	0.00
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D4	50.64	1.45	0.13	0.00
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F4	59.74	1.28	0.18	0.00
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D8	54.17	2.08	0.00	0.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E4	39.92	1.95	0.00	0.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E5	41.64	3.38	0.00	0.00
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I6	42.17	2.44	0.15	0.00
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D6	42.13	1.77	0.00	0.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F6	45.99	1.99	0.00	0.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E1	48.84	0.93	0.00	0.00
Mouse Schwann, donor1.CNhs12507.11728-123D9	142.67	5.53	0.76	0.08
Mouse Schwann, donor2.CNhs12573.11746-123F9	111.54	4.76	0.30	0.00
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G3	61.16	2.32	0.29	0.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F7	53.35	1.72	0.00	0.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C4	112.88	4.76	0.68	0.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C8	77.72	1.62	0.00	0.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F4	66.93	4.55	0.00	0.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F6	83.78	3.58	0.90	0.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A7	54.07	1.69	4.92	0.42
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I7	62.04	3.41	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E3	50.66	2.08	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I8	48.41	3.18	0.00	0.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G6	73.10	1.13	0.42	0.00
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H1	66.73	1.28	0.00	0.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I8	45.86	2.55	0.00	0.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B6	14.22	0.00	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G1	76.85	3.25	0.65	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G2	84.62	1.52	0.00	0.25
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G3	83.92	5.06	0.00	0.51
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B6	68.85	2.97	6.62	0.69
accessory axillary lymph node, adult.CNhs10475.1063-29H9	92.70	3.37	0.00	0.00
adrenal gland, adult.CNhs10508.49-24D7	62.35	1.48	0.15	0.00
adrenal gland, embryo E14.CNhs11038.406-44C5	60.55	2.43	0.17	0.00
adrenal gland, embryo E16.CNhs11004.1254-43D6	57.54	2.13	0.61	0.00
adrenal gland, embryo E17.CNhs11043.1263-45I1	66.19	0.92	0.00	0.00
adrenal gland, embryo E18.CNhs11026.1262-18F5	63.45	2.26	0.30	0.00
adrenal gland, neonate N00.CNhs11191.1311-23C1	80.90	2.23	0.24	0.00
adrenal gland, neonate N25.CNhs11223.1377-27I3	56.80	2.14	0.13	0.00
amnion, adult pregnant day17.5.CNhs10488.583-22A8	93.93	2.97	1.73	0.25
aorta, adult.CNhs10498.46-23H1	69.70	3.76	0.14	0.00
bone (os femoris), adult.CNhs10483.56-12G2	61.92	1.77	0.88	0.88
bone (os femoris), neonate N02.CNhs11227.1985-43F5	58.88	3.40	0.32	0.00
bone (os femoris), neonate N16.CNhs11225.1525-43A6	52.34	2.65	0.00	0.00
bone (os femoris), neonate N20.CNhs11195.1350-25C3	49.94	2.42	0.00	0.00
cecum, adult.CNhs10467.37-13H4	68.96	1.86	0.00	0.00
cerebellum, adult.CNhs10494.15-8B2	46.84	2.64	0.00	0.00
cerebellum, neonate N30.CNhs11135.1395-42I2	57.81	2.51	0.00	0.00
colon, adult.CNhs10468.36-18H7	55.43	2.55	0.00	0.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C7	132.76	3.12	0.60	0.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D1	101.38	4.20	0.60	0.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D4	128.98	2.29	0.76	0.00
corpora quadrigemina, adult.CNhs10501.16-22A4	63.06	2.10	0.00	0.00
corpus striatum, adult.CNhs10487.19-21D8	67.71	2.75	0.00	0.00
corpus striatum, neonate N00.CNhs11226.630-43F1	76.27	1.76	0.13	0.13
cortex, adult.CNhs10473.12-14D5	68.83	2.96	0.00	0.00
cortex, neonate N30.CNhs11107.1392-42F2	61.88	2.56	0.00	0.00
diencephalon, adult.CNhs10482.20-12F2	49.04	3.95	0.00	0.00
diencephalon, neonate N30.CNhs11201.1388-42B2	47.70	0.97	0.00	0.00
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B1	81.57	3.77	0.10	0.00
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A2	55.86	1.99	0.25	0.00
epididymis, adult.CNhs10490.58-23B2	68.24	1.26	0.00	0.00
eyeball, adult.CNhs10484.31-12G4	77.65	3.58	0.00	0.21
eyeball, embryo E12.CNhs11016.345-16C6	72.48	1.95	0.39	0.00
eyeball, embryo E14.CNhs10521.399-16E2	57.71	2.07	0.23	0.00
eyeball, embryo E15.CNhs10593.426-16C9	64.64	1.44	0.00	0.00
eyeball, embryo E17.CNhs11023.1261-18D4	69.17	1.96	0.15	0.00
eyeball, neonate N00.CNhs11207.633-15C6	60.08	4.49	0.00	0.00
eyeball, neonate N01.CNhs11140.1532-43E7	65.34	1.54	0.13	0.00
eyeball, neonate N02.CNhs11205.1551-44G8	60.25	2.16	0.28	0.00
eyeball, neonate N16.CNhs11188.777-19A2	52.26	3.36	0.52	0.00
forelimb, embryo E11.CNhs10596.335-25E2	82.13	2.59	1.29	0.00
forelimb, embryo E12.CNhs10600.359-14H2	83.02	1.32	0.57	0.00
forelimb, embryo E13.CNhs10589.384-1E2	71.08	1.58	0.18	0.00
forelimb, embryo E14.CNhs10577.413-26A8	71.90	1.32	0.88	0.00
forelimb, embryo E15.CNhs11007.437-20E7	70.07	1.11	0.28	0.00
forelimb, embryo E17.CNhs10598.1517-43C4	78.01	2.44	0.70	0.00
forelimb, embryo E18.CNhs11008.1520-43B5	64.00	2.26	0.00	0.00
gonad, embryo E13.CNhs11044.1564-45I6	69.26	1.39	0.20	0.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C8	94.80	0.70	0.00	0.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D2	92.90	2.57	0.00	0.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D5	94.06	1.70	0.57	0.00
heart, embryo E11.CNhs10586.331-24E9	65.45	1.66	0.41	0.00
heart, embryo E12.CNhs11015.353-12F5	68.48	1.64	0.94	0.00
heart, embryo E13.CNhs11013.376-3I9	67.34	1.44	0.00	0.00
heart, embryo E14.CNhs10597.403-26D4	69.84	2.13	0.47	0.00
heart, embryo E15.CNhs11017.431-16C8	59.23	1.57	0.39	0.20
heart, embryo E16.CNhs11021.457-17C6	59.08	2.16	0.46	0.00
heart, embryo E17.CNhs11025.479-18E5	57.20	2.33	0.00	0.00
heart, embryo E18.CNhs11030.1283-20G3	55.53	1.88	0.00	0.00
heart, neonate N00.CNhs11213.639-21E3	78.58	2.34	0.12	0.00
heart, neonate N03.CNhs11221.1349-25I2	53.15	2.63	0.16	0.00
heart, neonate N10.CNhs11118.749-24G1	57.95	2.46	0.33	0.00
heart, neonate N16.CNhs11209.782-15G1	42.56	1.46	0.00	0.00
heart, neonate N20.CNhs11127.821-26I6	39.77	1.32	0.15	0.00
heart, neonate N25.CNhs11196.1351-25D3	39.74	1.76	0.00	0.00
heart, neonate N30.CNhs11202.1390-42D2	36.37	1.88	0.00	0.00
hippocampus, adult.CNhs10478.13-16E8	54.04	1.89	0.00	0.00
hippocampus, neonate N00.CNhs11228.627-43G1	72.44	2.68	0.21	0.00
intestinal mucosa, adult.CNhs10506.860-29I3	55.18	3.97	0.00	0.00
intestine, adult.CNhs10496.178-9A3	53.42	1.59	0.00	0.00
intestine, embryo E12.CNhs11019.1251-16I5	72.52	2.56	1.28	0.00
intestine, embryo E13.CNhs11010.381-16D5	69.44	2.79	0.46	0.00
intestine, embryo E15.CNhs10602.976-16D8	68.04	2.06	0.26	0.00
intestine, embryo E16.CNhs10585.463-22H4	58.08	3.63	0.61	0.00
intestine, embryo E17.CNhs10582.482-18D3	49.81	2.00	0.22	0.00
intestine, embryo E18.CNhs10526.1289-20F7	65.82	2.28	0.00	0.00
intestine, neonate N00.CNhs11126.644-26D1	45.55	1.90	0.00	0.00
intestine, neonate N01.CNhs11192.1322-23E9	66.54	1.98	0.33	0.00
intestine, neonate N06.CNhs11102.688-20B8	58.06	3.77	0.25	0.00
intestine, neonate N07.CNhs11095.720-20F2	61.28	0.99	0.20	0.00
intestine, neonate N10.CNhs11098.755-23A5	65.12	4.09	0.00	0.00
intestine, neonate N20.CNhs11187.827-18D1	50.33	3.60	0.00	0.00
intestine, neonate N25.CNhs11121.1352-25E3	67.22	1.95	0.22	0.00
intestine, neonate N30.CNhs11131.1384-42G1	63.33	2.19	0.00	0.00
kidney, embryo E14.CNhs10606.411-4I9	117.21	2.85	0.38	0.00
kidney, embryo E15.CNhs10997.434-16F8	72.78	1.71	0.11	0.11
kidney, embryo E16.CNhs10584.464-22A5	64.24	1.13	0.00	0.00
kidney, embryo E17.CNhs11028.483-18I2	60.48	1.63	0.20	0.00
kidney, embryo E18.CNhs11001.1288-20C7	68.66	0.58	0.39	0.00
kidney, neonate N00.CNhs11214.646-21G7	85.36	2.17	0.07	0.07
kidney, neonate N10.CNhs11206.758-6D5	65.26	1.52	0.00	0.00
kidney, neonate N20.CNhs11113.832-19I1	56.39	1.77	0.00	0.00
kidney, neonate N25.CNhs11122.1353-25F3	53.54	1.10	0.16	0.00
kidney, neonate N30.CNhs11203.1385-42H1	48.62	1.73	0.12	0.00
liver, adult pregnant day01.CNhs10466.508-5B2	75.00	3.85	0.30	0.00
liver, embryo E12.CNhs10601.355-15F8	66.74	2.84	0.17	0.00
liver, embryo E13.CNhs10524.378-3H6	67.42	2.56	0.20	0.00
liver, embryo E14.CNhs10594.409-16E1	71.51	3.15	0.45	0.00
liver, embryo E15.CNhs10520.433-16D7	65.52	3.85	0.20	0.00
liver, embryo E16.CNhs10523.462-17F5	69.22	1.45	0.24	0.00
liver, embryo E17.CNhs10510.481-18A3	62.13	2.04	0.00	0.00
liver, embryo E18.CNhs10579.499-43G4	55.24	2.30	0.00	0.00
liver, neonate N00.CNhs11117.641-24F4	124.20	4.22	0.65	0.00
liver, neonate N03.CNhs11123.1345-25G2	76.60	3.84	0.00	0.00
liver, neonate N06.CNhs11101.684-20A8	94.89	2.88	1.44	0.00
liver, neonate N07.CNhs11103.716-20H2	106.80	4.09	0.74	0.00
liver, neonate N10.CNhs11115.751-24B9	88.62	4.37	0.31	0.31
liver, neonate N20.CNhs11220.823-25A3	89.16	4.55	0.25	0.00
liver, neonate N25.CNhs11198.1368-26H1	78.58	3.41	0.18	0.00
liver, neonate N30.CNhs11106.1382-42D1	111.93	2.41	0.00	0.00
lung, adult.CNhs10474.28-22B1	61.15	2.59	0.18	0.00
lung, embryo E12.CNhs10522.354-16G2	67.27	1.52	0.57	0.00
lung, embryo E14.CNhs10604.404-26F8	85.56	2.12	0.16	0.00
lung, embryo E15.CNhs11020.432-17C5	70.44	1.70	0.51	0.00
lung, embryo E16.CNhs10998.458-17B6	66.89	2.58	0.00	0.00
lung, embryo E17.CNhs10605.480-44A6	61.81	1.34	0.50	0.00
lung, embryo E18.CNhs10583.1287-20I6	50.94	2.14	0.00	0.00
lung, neonate N00.CNhs11224.640-42C6	58.34	2.34	0.39	0.00
lung, neonate N06.CNhs11212.683-20E5	68.73	2.84	0.32	0.00
lung, neonate N07.CNhs11111.715-19A3	75.30	1.11	0.00	0.00
lung, neonate N10.CNhs11219.750-23E6	62.51	1.91	0.00	0.00
lung, neonate N20.CNhs11109.822-18A4	57.02	1.47	0.16	0.00
lung, neonate N25.CNhs11119.1359-25C7	59.40	2.07	0.00	0.00
lung, neonate N30.CNhs11133.1394-42H2	59.16	3.18	0.14	0.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A1	78.41	0.00	0.00	1.51
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A1	71.25	1.63	0.00	0.54
mammary gland, adult lactating day02.CNhs10480.595-22B6	63.93	0.98	0.00	0.00
mammary gland, adult pregnant day19.CNhs10476.588-5H2	83.33	2.21	1.66	0.00
medulla oblongata, adult.CNhs10477.17-12C2	53.46	1.61	0.16	0.00
medulla oblongata, neonate N30.CNhs11200.1396-42A3	56.38	2.58	0.00	0.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C7	87.87	3.28	0.16	0.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C2	46.20	1.26	0.25	0.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E1	54.58	1.89	0.63	0.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E2	64.03	2.34	1.17	0.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E3	51.49	1.08	0.00	0.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D7	55.68	0.96	0.96	0.24
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D8	50.13	0.67	1.34	0.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D9	49.54	1.42	0.28	0.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D4	54.24	0.81	0.40	0.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D5	55.24	0.88	0.58	0.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D6	50.60	1.98	1.58	0.00
olfactory brain, adult.CNhs10489.18-22I9	53.34	1.29	0.00	0.00
ovary, adult.CNhs10507.91-2I7	72.11	3.26	0.43	0.00
ovary, embryo E18.CNhs11040.505-44H7	64.46	1.78	0.18	0.00
ovary, neonate N00.CNhs11217.1299-22I4	81.93	4.56	0.16	0.16
oviduct, adult pregnant day01.CNhs10500.988-6G6	65.82	1.15	0.00	0.00
pancreas, adult.CNhs10486.34-16E4	49.12	2.65	0.00	0.00
pancreas, embryo E14.CNhs11012.405-44F4	65.31	1.46	0.73	0.00
pancreas, embryo E15.CNhs11042.1556-45F2	66.51	2.12	0.00	0.00
pancreas, embryo E16.CNhs11003.460-26E5	62.99	2.64	0.00	0.00
pancreas, embryo E17.CNhs10599.1558-45G3	63.49	2.36	0.00	0.00
pancreas, embryo E18.CNhs10580.1535-43I7	54.11	2.15	0.31	0.00
pancreas, neonate N00.CNhs11105.645-26G9	69.00	1.55	0.00	0.26
pancreas, neonate N01.CNhs11138.1531-43D7	70.89	2.18	0.36	0.00
pancreas, neonate N02.CNhs11139.1539-43D8	80.57	1.78	0.71	0.00
pancreas, neonate N16.CNhs11136.787-43B6	66.05	2.21	0.32	0.00
pancreas, neonate N25.CNhs11094.1555-45E2	48.49	0.00	0.00	0.00
pancreas, neonate N30.CNhs11182.1548-44H5	45.38	3.09	0.00	0.00
pituitary gland, adult.CNhs10493.21-1G8	64.00	1.36	0.00	0.00
pituitary gland, embryo E12.CNhs11018.346-16E6	55.82	1.26	0.36	0.18
pituitary gland, embryo E13.CNhs11009.370-44C7	63.77	3.23	0.52	0.00
pituitary gland, embryo E14.CNhs11037.398-44A5	65.37	1.93	0.64	0.00
pituitary gland, embryo E15.CNhs10592.427-16B9	64.73	2.48	1.06	0.18
pituitary gland, embryo E16.CNhs11036.449-43F6	50.48	1.25	0.54	0.00
pituitary gland, embryo E17.CNhs11039.1265-44F5	58.09	2.63	1.48	0.16
pituitary gland, neonate N00.CNhs11190.1308-22E9	73.07	4.26	0.30	0.00
placenta, adult pregnant day10.CNhs10472.539-13I7	95.98	5.40	0.00	0.00
placenta, adult pregnant day17.CNhs10464.577-18G3	136.84	5.93	0.85	0.00
prostate, adult.CNhs10470.859-1F8	78.73	2.87	0.22	0.00
skin, adult.CNhs10492.30-1C3	48.48	2.64	0.16	0.00
skin, neonate N00.CNhs11124.650-25G4	99.14	3.07	0.16	0.00
skin, neonate N03.CNhs11215.662-22H3	88.54	2.83	0.24	0.00
skin, neonate N06.CNhs11097.693-20I5	81.65	1.79	0.72	0.00
skin, neonate N10.CNhs11108.762-6C4	75.50	2.79	0.16	0.16
small intestine, neonate N16.CNhs11114.790-21I1	55.67	2.04	0.00	0.00
spinal cord, adult.CNhs10505.24-13C9	53.96	2.60	0.00	0.00
spleen, adult.CNhs10465.25-2G2	62.88	2.22	0.17	0.00
spleen, embryo E16.CNhs11035.461-43C1	64.39	2.27	0.00	0.00
spleen, embryo E18.CNhs11011.1271-21F2	68.52	1.30	0.37	0.00
spleen, neonate N10.CNhs11116.752-24D1	72.15	4.14	0.00	0.00
spleen, neonate N20.CNhs11112.824-19H1	64.25	3.69	0.14	0.00
spleen, neonate N25.CNhs11099.1354-25G3	66.80	1.60	0.00	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C6	179.67	4.59	0.68	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C9	161.22	4.06	1.54	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D3	173.86	3.73	0.97	0.00
stomach, adult.CNhs10503.33-1H6	76.37	0.95	0.00	0.00
stomach, embryo E12.CNhs10588.356-43E3	78.93	2.53	0.63	0.00
stomach, embryo E15.CNhs10603.1252-16G8	70.96	1.22	0.41	0.00
stomach, embryo E16.CNhs11022.459-17D4	69.99	2.38	0.22	0.00
stomach, embryo E17.CNhs11006.1035-18D5	67.12	2.30	0.00	0.00
stomach, embryo E18.CNhs10999.1286-20C6	58.96	2.40	0.22	0.00
stomach, neonate N03.CNhs11193.1340-24B8	72.15	3.10	0.54	0.00
stomach, neonate N07.CNhs11210.718-18A9	74.72	3.06	0.17	0.00
stomach, neonate N25.CNhs11104.1355-25E4	62.82	2.09	0.00	0.00
stomach, neonate N30.CNhs11134.1386-42I1	69.99	2.07	0.00	0.00
submandibular gland, adult.CNhs10469.59-29C1	53.44	2.49	0.00	0.00
testis, adult.CNhs10504.57-7G5	48.48	3.95	275.65	23.11
testis, embryo E13.CNhs11031.389-23F5	79.39	2.99	0.30	0.00
testis, embryo E15.CNhs11034.443-27C5	71.64	2.65	0.50	0.00
testis, embryo E16.CNhs11033.470-26G5	64.36	3.11	0.00	0.00
testis, embryo E17.CNhs11029.486-18I5	59.03	2.71	0.13	0.00
testis, embryo E18.CNhs11027.503-18G5	68.43	2.70	0.17	0.00
testis, neonate N00.CNhs11189.1300-22B7	86.37	2.82	0.35	0.00
testis, neonate N07.CNhs11222.726-26I4	77.99	3.39	0.52	0.00
testis, neonate N10.CNhs11204.763-44D9	76.23	3.46	0.31	0.10
testis, neonate N20.CNhs11110.839-18H3	59.43	3.87	3.62	0.48
testis, neonate N30.CNhs11130.1391-42E2	59.33	3.17	135.37	15.55
thymus, adult.CNhs10471.38-12B5	73.31	1.90	0.00	0.00
thymus, embryo E14.CNhs11041.402-44I4	69.13	2.23	1.01	0.00
thymus, embryo E15.CNhs11005.430-45I2	76.21	1.75	1.34	0.00
thymus, embryo E16.CNhs11002.456-26C5	76.39	1.95	0.52	0.00
thymus, embryo E17.CNhs10581.478-18C1	77.34	2.15	0.54	0.00
thymus, embryo E18.CNhs10595.1273-19G4	88.21	1.39	1.79	0.00
thymus, neonate N02.CNhs11181.1541-43F8	81.61	1.32	0.24	0.00
thymus, neonate N03.CNhs11137.2104-43C7	87.28	0.89	0.74	0.00
thymus, neonate N06.CNhs11197.681-26C4	95.51	1.41	0.30	0.00
thymus, neonate N07.CNhs11211.713-19D3	87.94	1.91	0.08	0.00
thymus, neonate N10.CNhs11194.748-24E4	82.58	1.11	0.20	0.00
thymus, neonate N20.CNhs11186.820-7A2	76.80	1.75	0.19	0.00
thymus, neonate N25.CNhs11125.1362-25G7	81.88	1.25	0.38	0.00
thymus, neonate N30.CNhs11132.1393-42G2	77.26	0.82	0.58	0.00
tongue, adult.CNhs10499.32-1B4	46.25	1.59	0.00	0.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H3	134.08	2.89	0.67	0.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F7	128.38	2.87	0.27	0.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G5	149.25	4.87	0.67	0.00
urinary bladder, adult.CNhs10481.879-12E4	69.16	3.28	0.58	0.00
uterus, adult pregnant day19.CNhs10497.590-15F5	61.00	2.63	0.38	0.00
uterus, adult.CNhs10509.92-27E5	69.78	2.20	0.00	0.00
vagina, adult.CNhs10502.89-27D5	64.74	2.57	0.00	0.00
vesicular gland, adult.CNhs10491.51-27F8	53.17	2.01	0.00	0.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A1	49.13	1.69	0.00	0.00
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A2	47.41	1.38	0.00	0.00
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A3	41.82	0.00	0.00	0.00
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D7	53.10	1.20	0.00	0.00
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A4	43.85	1.37	0.00	0.00
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A5	38.53	2.27	0.00	0.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A6	62.78	0.68	0.00	0.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A7	43.23	0.90	0.00	0.00
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A8	59.81	2.72	0.00	0.45
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A9	47.63	1.55	0.00	0.00
whole body, embryo E11.CNhs11014.324-5I8	67.77	2.70	0.31	0.10
whole body, embryo E12.CNhs10587.857-27C9	64.24	2.39	0.40	0.00
whole body, embryo E13.CNhs10512.372-23H2	66.24	2.39	0.51	0.00
whole body, embryo E14.5.CNhs10578.420-27D2	60.53	0.24	0.24	0.00
whole body, embryo E14.CNhs10519.395-14B1	56.60	2.31	0.00	0.00
whole body, embryo E16.CNhs10514.453-14F2	52.76	1.29	0.37	0.18
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G5	51.12	0.89	0.22	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G5	50.07	1.85	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G5	47.50	1.28	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G5	51.55	1.52	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G5	50.44	1.27	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G5	57.91	1.89	0.00	0.19
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G5	58.06	1.78	0.47	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G5	60.63	2.05	0.32	0.13
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G5	63.18	2.18	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G5	49.06	2.38	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G5	58.29	3.01	0.00	0.12
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G5	56.33	3.86	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G5	58.52	2.47	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G5	45.93	1.62	0.00	0.15
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G5	45.26	1.71	0.34	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G5	49.87	1.06	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G5	50.31	2.38	0.48	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G5	51.89	1.60	0.15	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G5	51.67	1.13	0.09	0.09
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G5	48.99	1.44	0.17	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G5	50.31	2.74	0.18	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G5	46.04	2.10	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G5	48.48	1.90	0.27	0.14
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G5	35.35	1.12	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G5	48.05	1.42	0.24	0.12
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G5	47.48	1.87	0.10	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G5	49.93	2.86	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G5	57.17	2.17	0.15	0.00
whole body, embryo E17.5.CNhs10513.490-9F9	55.94	1.35	0.39	0.19
whole body, embryo E17.CNhs10517.475-3I5	64.70	0.50	0.00	0.00
whole body, embryo E18.CNhs10516.493-3B3	57.78	2.11	0.00	0.00
whole body, neonate N00.CNhs10525.657-19C2	70.26	1.29	0.86	0.00
whole body, neonate N01.CNhs10576.659-23C6	66.57	1.72	0.96	0.00
whole body, neonate N06.CNhs10515.692-21D1	54.04	3.09	0.44	0.00
whole body, neonate N10.CNhs10518.761-6B4	60.98	1.16	0.23	0.23

• Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data

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No analysis results for this cluster

Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse

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GeneID:	19822
LocusTag:	-
chromosome:	5
map location:	5 B2, 5, 5 B2;;5
type of gene:	protein-coding
Symbol from nomenclature authority:	Rnf4
Full name from nomenclature authority:	ring finger protein 4
Nomenclature status:	O
Other designations:	E3 ubiquitin ligase RNF4, gene trap ROSA b-geo 8, E3 ubiquitin ligase RNF4;;gene trap ROSA b-geo 8
Modification date:	16.11.2011