CL:0000003

Name:	cell in vivo
Namespace:	cell
Creation date:	{{{obo_creation_date}}}

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0000000(cell)

Children

is a:

CL:0000034 (stem cell),CL:0000055 (non-terminally differentiated cell),CL:0000064 (ciliated cell),CL:0000151 (secretory cell),CL:0000181 (metabolising cell),CL:0000183 (contractile cell),CL:0000197 (receptor cell),CL:0000211 (electrically active cell),CL:0000212 (absorptive cell),CL:0000215 (barrier cell),CL:0000219 (motile cell),CL:0000255 (eukaryotic cell),CL:0000325 (stuff accumulating cell),CL:0000412 (polyploid cell),CL:0000473 (defensive cell),CL:0000627 (transporting cell),CL:0000630 (supportive cell),CL:0000668 (parenchymal cell),CL:0002242 (nucleate cell),CL:0002371 (somatic cell),CL:0007004 (premigratory neural crest cell),CL:2000021 (sebaceous gland native cell)

derives from:

FF:0000002 (in vivo cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10150-102I6 (medial frontal gyrus, adult, donor10252)
• 10151-102I7 (amygdala, adult, donor10252)
• 10153-102I9 (hippocampus, adult, donor10252)
• 10154-103A1 (thalamus, adult, donor10252)
• 10155-103A2 (medulla oblongata, adult, donor10252)
• 10157-103A4 (parietal lobe, adult, donor10252)
• 10158-103A5 (substantia nigra, adult, donor10252)
• 10159-103A6 (spinal cord, adult, donor10252)
• 10160-103A7 (pineal gland, adult, donor10252)
• 10161-103A8 (globus pallidus, adult, donor10252)

... further results Mouse (Mus musculus)

• 10150-102I6 (medial frontal gyrus, adult, donor10252)
• 10151-102I7 (amygdala, adult, donor10252)
• 10153-102I9 (hippocampus, adult, donor10252)
• 10154-103A1 (thalamus, adult, donor10252)
• 10155-103A2 (medulla oblongata, adult, donor10252)
• 10157-103A4 (parietal lobe, adult, donor10252)
• 10158-103A5 (substantia nigra, adult, donor10252)
• 10159-103A6 (spinal cord, adult, donor10252)
• 10160-103A7 (pineal gland, adult, donor10252)
• 10161-103A8 (globus pallidus, adult, donor10252)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000003 (cell in vivo), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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No analysis results for this cluster

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