NonredundantMotifs:158

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known158
• db :UNIPROBE
• Id :Sox5_secondary
• name :SCI09
• score :0.01717827215599952
  
• External refs:

EntrezGene:6660
UniProt:6660

• Internal refs:

EntrezGene:6660

Motif matrix

P0 A C G T 1 0.246578824550158 0.230352422347537 0.241808372138854 0.281260380963451 2 0.352611296766834 0.21868526551623 0.156655489800209 0.272047947916727 3 0.249498660378211 0.128873063600812 0.215834456409464 0.405793819611513 4 0.00750949461072121 0.736577392305127 0.0874808472008196 0.168432265883333 5 0.566572318573942 0.0592585509291346 0.191060229142983 0.183108901353941 6 0.149303934412141 0.0240618378493802 0.164680260870031 0.661953966868447 7 0.540014623524312 0.27910787894538 0.133921456741945 0.0469560407883626 8 0.755322813500231 0.101222224481517 0.0383146549863443 0.105140307031908 9 0.170384556658219 0.0954060736808783 0.09295751671874 0.641251852942162 10 0.0971706447240978 0.227591113415838 0.0655096117351651 0.609728630124899 11 0.348301905672527 0.171086980072369 0.180187431238016 0.300423683017089 12 0.602718110357332 0.200283945461706 0.114330144323851 0.082667799857111 13 0.142863984092632 0.302783814713419 0.453242784324801 0.101109416869148 14 0.252334194715598 0.240815350195481 0.258541244745317 0.248309210343605 15 0.285758240479904 0.214949760158231 0.251056901444146 0.248235097917719