NonredundantMotifs:130

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known130
• db :HOCOMOCO
• Id :SOX17_f2
• name  :
• score :0.04004651643343136
  
• External refs:

EntrezGene:64321
UniProt:64321

• Internal refs:

EntrezGene:64321

Motif matrix

P0 A C G T 1 8.82375823519874 16.068801803576342 23.21044089250086 8.927213316205659 2 4.864665877248926 11.79934420260573 40.36620416762694 0.0 3 57.0302142474816 0.0 0.0 0.0 4 0.0 57.0302142474816 0.0 0.0 5 57.0302142474816 0.0 0.0 0.0 6 57.0302142474816 0.0 0.0 0.0 7 0.0 0.0 0.0 57.0302142474816 8 10.867843661112556 1.9665573671009586 40.26269848506618 3.933114734201912 9 21.632131038110522 0.0 20.70063049661735 14.697452712753732 10 18.734073129516414 5.899672101302865 17.699016303908593 14.697452712753732 11 12.730895345652739 15.732458936807657 16.76751576241542 11.79934420260573 12 36.43308943342501 5.899672101302865 0.0 14.697452712753732 13 11.79934420260573 3.00161419270875 0.0 42.229255852167114 14 0.0 0.0 8.797780611450866 48.23243363603079 15 0.0 0.0 35.39808320937108 21.632131038110522 16 1.9665573671009586 0.0 17.699016303908593 37.36464057647202 17 0.0 2.8981085101479676 8.90128629401162 45.230819443322034 18 4.554186780731975 4.554186780731975 39.434539171083735 8.487301514933868