NonredundantMotifs:50

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known50
• db :SWISSREGULON
• Id :HOX(A4,D4).p2
• name :HOX(A4,D4)
• score :0.18028113807999635
  
• External refs:

EntrezGene:HOX(A4
UniProt:HOX(A4

EntrezGene:D4)
UniProt:D4)

• Internal refs:

EntrezGene:HOX(A4

EntrezGene:D4)

Motif matrix
P0 A C G T 1 59.405703 0.80491 27.344188 0.541267 2 42.982944 6.277354 0 38.83577 3 83.4973509999999 0 1.945583 2.653134 4 87.3588629999999 0 0 0.737205 5 4.316322 6.338996 0.544015 76.896735 6 0 2.921714 3.278825 81.8955289999999 7 43.489619 0 43.995291 0.611158 8 1.940413 0 86.1556549999999 0