NonredundantMotifs:53

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known53
• db :HOCOMOCO
• Id :SRF_do
• name  :
• score :0.13333556935218455
  
• External refs:

EntrezGene:6722
UniProt:6722

• Internal refs:

EntrezGene:6722

Motif matrix

P0 A C G T 1 569.0517601466087 188.14145917585756 623.7866189871102 795.0201616904222 2 21.34523334711168 2039.2802677428863 72.51534939684747 42.859149513156964 3 21.23207362254708 2082.1427525028544 4.668306923673342 67.95686695092692 4 1151.3753212374045 59.83140338518785 16.05629484668137 948.7369805307262 5 359.9680521061649 25.07088701106914 64.51215220633966 1726.4489086764295 6 1710.1112546121865 20.31018622486939 122.1193310802891 323.4592280826575 7 224.12515394003373 62.20497181500503 55.315825405325086 1834.3540488396375 8 1493.750389248867 76.6465672194731 58.107279479370575 547.4957640522936 9 718.186677689285 56.742667620263134 128.18493280988855 1272.8857218805626 10 116.44076309895229 4.900077101293365 2040.6195802775285 14.03957952222673 11 56.930773750973685 9.826348039550682 2073.5274803848465 35.71539782463086 12 384.2234353655347 390.23291669976885 1077.180694792354 324.36295314234144 13 617.3161698292167 1236.6831617709977 176.30258777065475 145.69808062912855 14 1544.2044967519807 63.96108848186516 266.5608904415209 301.2735243246348 15 319.9319203818095 266.9500855877998 450.2744018142869 1138.8435922161052