Personal tools

NonredundantMotifs:83

From FANTOM5_SSTAR

Revision as of 14:08, 30 April 2013 by Autoedit (talk | contribs) (Created page with "{{Known_motif |entrez_gene_id=5916 |motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR::RAR_DR5 /HOCOMOCO:RARA_f2~RARG_do |name=known83 |representative_motif_d...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known83
  • db :HOCOMOCO
  • Id :RARG_do
  • name  :
  • score :0.4986598336095242
  • External refs:
EntrezGene:5916
UniProt:5916

  • Internal refs:
EntrezGene:5916


Motif matrix
{{{PWM}}}

Sub Motif Members