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MCL coexpression mm9:3677

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Phase1 CAGE Peaks

 Short description
Mm9::chr8:46713412..46713425,+p14@Sorbs2
Mm9::chr8:46713434..46713447,+p19@Sorbs2
Mm9::chr8:46713466..46713483,+p17@Sorbs2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest4.64e-1892
central nervous system3.72e-1173
primary circulatory organ5.07e-1118
heart5.07e-1118
primitive heart tube5.07e-1118
primary heart field5.07e-1118
anterior lateral plate mesoderm5.07e-1118
heart tube5.07e-1118
heart primordium5.07e-1118
cardiac mesoderm5.07e-1118
cardiogenic plate5.07e-1118
heart rudiment5.07e-1118
nervous system2.54e-1075
tube3.48e-10114
anatomical conduit8.92e-10122
neurectoderm1.03e-0964
neural plate1.03e-0964
presumptive neural plate1.03e-0964
ectoderm-derived structure5.67e-0995
ectoderm5.67e-0995
presumptive ectoderm5.67e-0995
cardiovascular system7.50e-0923
circulatory system7.50e-0923
multi-cellular organism2.05e-08333
compound organ7.92e-0843
epithelial tube3.29e-0747
pre-chordal neural plate3.40e-0749


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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