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MCL coexpression mm9:1625

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Phase1 CAGE Peaks

 Short description
Mm9::chr12:70825926..70825973,+p1@Atp5s
Mm9::chr2:101469087..101469111,-p3@B230118H07Rik
Mm9::chr2:101469115..101469171,-p2@B230118H07Rik
Mm9::chr2:101469173..101469182,-p4@B230118H07Rik
Mm9::chr2:101469183..101469191,-p5@B230118H07Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain0.0115049580890812
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)0.0115049580890812
GO:0045259proton-transporting ATP synthase complex0.0115049580890812
GO:0016469proton-transporting two-sector ATPase complex0.0177368103873336
GO:0015992proton transport0.0185357658101865
GO:0006818hydrogen transport0.0185357658101865
GO:0015078hydrogen ion transmembrane transporter activity0.0230099161781625
GO:0015077monovalent inorganic cation transmembrane transporter activity0.0230099161781625
GO:0022890inorganic cation transmembrane transporter activity0.0279101761049934



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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