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MCL coexpression mm9:813

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Phase1 CAGE Peaks

 Short description
Mm9::chr13:104968878..104968952,+p1@Trim23
Mm9::chr17:32487480..32487513,-p1@Akap8l
Mm9::chr3:151856767..151856795,-p5@Dnajb4
Mm9::chr3:154756157..154756204,-p@chr3:154756157..154756204
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Mm9::chr5:110352652..110352683,+p1@ENSMUST00000112544
Mm9::chr7:28516392..28516416,+p2@Zfp60
Mm9::chr7:48888915..48888973,+p1@Zfp788
Mm9::chr8:93837122..93837178,-p1@Rpgrip1l
Mm9::chr9:59201237..59201272,-p1@Bbs4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0042384cilium biogenesis0.00181597261659763
GO:0005813centrosome0.00521245039954293
GO:0030031cell projection biogenesis0.00521245039954293
GO:0005815microtubule organizing center0.00521245039954293
GO:0021915neural tube development0.00521245039954293
GO:0007380specification of segmental identity, head0.00521245039954293
GO:0031344regulation of cell projection organization and biogenesis0.00521245039954293
GO:0007382specification of segmental identity, maxillary segment0.00521245039954293
GO:0035287head segmentation0.00521245039954293
GO:0022038corpus callosum development0.00521245039954293
GO:0042305specification of segmental identity, mandibular segment0.00521245039954293
GO:0030092regulation of flagellum biogenesis0.00521245039954293
GO:0035289posterior head segmentation0.00521245039954293
GO:0045724positive regulation of flagellum biogenesis0.00521245039954293
GO:0001654eye development0.00703231761823199
GO:0021670lateral ventricle development0.00810714557875194
GO:0060039pericardium development0.00810714557875194
GO:0021591ventricular system development0.00810714557875194
GO:0021988olfactory lobe development0.010943147442655
GO:0021772olfactory bulb development0.010943147442655
GO:0035085cilium axoneme0.012685969360038
GO:0043584nose development0.012685969360038
GO:0001895retinal homeostasis0.012685969360038
GO:0007423sensory organ development0.0139499293895927
GO:0035058sensory cilium biogenesis0.0140258332338738
GO:0046548retinal rod cell development0.0140258332338738
GO:0048598embryonic morphogenesis0.0144545584929123
GO:0051130positive regulation of cellular component organization and biogenesis0.014584868654392
GO:0007350blastoderm segmentation0.014584868654392
GO:0009296flagellum biogenesis0.014584868654392
GO:0043009chordate embryonic development0.0151035449562389
GO:0009792embryonic development ending in birth or egg hatching0.0151035449562389
GO:0043064flagellum organization and biogenesis0.0154666814034071
GO:0021532neural tube patterning0.0166638556714407
GO:0007379segment specification0.0166638556714407
GO:0005932basal body0.0175089628525996
GO:0032990cell part morphogenesis0.0175089628525996
GO:0048858cell projection morphogenesis0.0175089628525996
GO:0030030cell projection organization and biogenesis0.0175089628525996
GO:0045494photoreceptor cell maintenance0.0182210999226393
GO:0015630microtubule cytoskeleton0.0190610103069554
GO:0008589regulation of smoothened signaling pathway0.0203342613919625
GO:0035115embryonic forelimb morphogenesis0.0203342613919625
GO:0044441cilium part0.0221700589639689
GO:0035116embryonic hindlimb morphogenesis0.0221700589639689
GO:0042462eye photoreceptor cell development0.0221700589639689
GO:0035136forelimb morphogenesis0.0232450541616362
GO:0001754eye photoreceptor cell differentiation0.0242748426948801
GO:0042461photoreceptor cell development0.0252621924078737
GO:0019216regulation of lipid metabolic process0.0276619525470583
GO:0001889liver development0.0293571774882767
GO:0046530photoreceptor cell differentiation0.0293571774882767
GO:0005930axoneme0.0293571774882767
GO:0035137hindlimb morphogenesis0.0293571774882767
GO:0022037metencephalon development0.0293571774882767
GO:0021549cerebellum development0.0293571774882767
GO:0021537telencephalon development0.0293571774882767
GO:0001894tissue homeostasis0.0305940695014491
GO:0009790embryonic development0.0305940695014491
GO:0048871multicellular organismal homeostasis0.0305940695014491
GO:0043232intracellular non-membrane-bound organelle0.0305940695014491
GO:0043228non-membrane-bound organelle0.0305940695014491
GO:0000902cell morphogenesis0.0308300686697638
GO:0032989cellular structure morphogenesis0.0308300686697638
GO:0007224smoothened signaling pathway0.031319052062797
GO:0009887organ morphogenesis0.0348488304909991
GO:0007368determination of left/right symmetry0.0363176403676828
GO:0044430cytoskeletal part0.0363176403676828
GO:0009799determination of symmetry0.0363176403676828
GO:0009855determination of bilateral symmetry0.0363176403676828
GO:0016358dendrite development0.0398764047791684
GO:0009880embryonic pattern specification0.0403253145120023
GO:0030902hindbrain development0.0405181487833023
GO:0007286spermatid development0.0405181487833023
GO:0035282segmentation0.0405181487833023
GO:0001843neural tube closure0.0405181487833023
GO:0048592eye morphogenesis0.0405181487833023
GO:0048515spermatid differentiation0.0409232834134139
GO:0014020primary neural tube formation0.0413179107994317
GO:0031072heat shock protein binding0.0429758044872341
GO:0007399nervous system development0.0429758044872341
GO:0008270zinc ion binding0.0434286716614663
GO:0051128regulation of cellular component organization and biogenesis0.0465727875817791
GO:0001841neural tube formation0.0465727875817791
GO:0001839neural plate morphogenesis0.0468707672082345
GO:0001840neural plate development0.0474454949779165
GO:0001838embryonic epithelial tube formation0.0474454949779165
GO:0051082unfolded protein binding0.0477227257535389
GO:0030534adult behavior0.0496068184300374



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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