MCL coexpression mm9:1551

Phase1 CAGE Peaks

	Short description
Mm9::chr11:115885803..115885825,-	p2@Gm12657 p2@Gm6421 p2@Gm6749 p2@Gm7194 p2@Gm7227 p2@H3f3a p2@H3f3b p2@H3f3c
Mm9::chr17:27666934..27666939,+	p1@ENSMUST00000119573
Mm9::chr18:15991281..15991283,+	p1@Gm10036
Mm9::chr18:60934280..60934317,+	p1@Rps14
Mm9::chrX:69048950..69048954,+	p1@ENSMUST00000164796

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0005843	cytosolic small ribosomal subunit (sensu Eukaryota)	0.03067988823755
GO:0015935	small ribosomal subunit	0.0328713088259464
GO:0005830	cytosolic ribosome (sensu Eukaryota)	0.0339670191201446
GO:0033279	ribosomal subunit	0.0339670191201446
GO:0044445	cytosolic part	0.0411987070618529
GO:0042254	ribosome biogenesis and assembly	0.0446501944885772
GO:0003735	structural constituent of ribosome	0.0446501944885772
GO:0005840	ribosome	0.0446501944885772
GO:0022613	ribonucleoprotein complex biogenesis and assembly	0.046019832356325

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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