Personal tools

MCL coexpression mm9:54

From FANTOM5_SSTAR

Revision as of 11:01, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:118735746..118735747,-p@chr10:118735746..118735747
-
Mm9::chr10:80827591..80827604,-p1@4930404N11Rik
Mm9::chr11:100195721..100195728,+p1@Gast
Mm9::chr11:100576668..100576690,-p@chr11:100576668..100576690
-
Mm9::chr11:116168482..116168504,-p3@Exoc7
Mm9::chr11:3889927..3889949,+p4@Gal3st1
Mm9::chr11:58194063..58194121,+p@chr11:58194063..58194121
+
Mm9::chr11:58194122..58194139,+p@chr11:58194122..58194139
+
Mm9::chr11:58204119..58204151,+p@chr11:58204119..58204151
+
Mm9::chr11:58425591..58425605,-p@chr11:58425591..58425605
-
Mm9::chr11:58426058..58426084,-p@chr11:58426058..58426084
-
Mm9::chr11:58426983..58426997,-p1@2210407C18Rik
Mm9::chr11:98508069..98508086,+p1@Gsdma2
Mm9::chr12:92874353..92874357,-p@chr12:92874353..92874357
-
Mm9::chr13:98281106..98281135,+p@chr13:98281106..98281135
+
Mm9::chr14:60828255..60828262,+p@chr14:60828255..60828262
+
Mm9::chr14:63818095..63818121,-p@chr14:63818095..63818121
-
Mm9::chr15:74545262..74545278,+p1@Psca
Mm9::chr15:74546444..74546462,+p@chr15:74546444..74546462
+
Mm9::chr15:74546464..74546474,+p@chr15:74546464..74546474
+
Mm9::chr15:74546891..74546901,+p@chr15:74546891..74546901
+
Mm9::chr15:74546944..74546947,+p@chr15:74546944..74546947
+
Mm9::chr15:74547032..74547038,+p@chr15:74547032..74547038
+
Mm9::chr15:74547060..74547090,+p@chr15:74547060..74547090
+
Mm9::chr15:74547096..74547106,+p@chr15:74547096..74547106
+
Mm9::chr15:78686128..78686169,-p2@Lgals2
Mm9::chr15:82082899..82082905,+p5@1500009C09Rik
Mm9::chr16:21299969..21299974,+p@chr16:21299969..21299974
+
Mm9::chr16:32277734..32277737,+p7@Rnf168
Mm9::chr16:92540124..92540127,+p@chr16:92540124..92540127
+
Mm9::chr16:95479380..95479389,+p12@Kcnj15
Mm9::chr16:96607931..96607951,+p6@Igsf5
Mm9::chr16:96607997..96608007,+p7@Igsf5
Mm9::chr17:28695157..28695164,+p@chr17:28695157..28695164
+
Mm9::chr17:28695207..28695269,-p@chr17:28695207..28695269
-
Mm9::chr17:28695274..28695338,-p@chr17:28695274..28695338
-
Mm9::chr17:28695365..28695397,-p@chr17:28695365..28695397
-
Mm9::chr17:28695743..28695826,-p@chr17:28695743..28695826
-
Mm9::chr17:31301990..31301998,-p1@Gm3090
p1@Tff1
Mm9::chr17:35775067..35775078,-p@chr17:35775067..35775078
-
Mm9::chr17:35775084..35775098,-p@chr17:35775084..35775098
-
Mm9::chr17:35775239..35775248,-p@chr17:35775239..35775248
-
Mm9::chr17:35780629..35780644,-p1@Dpcr1
Mm9::chr17:44780526..44780528,-p@chr17:44780526..44780528
-
Mm9::chr17:47863783..47863797,+p1@Pgc
Mm9::chr17:47865681..47865691,+p@chr17:47865681..47865691
+
Mm9::chr17:47865709..47865712,+p@chr17:47865709..47865712
+
Mm9::chr17:47865718..47865741,+p@chr17:47865718..47865741
+
Mm9::chr17:47865745..47865773,+p@chr17:47865745..47865773
+
Mm9::chr17:47865779..47865794,+p@chr17:47865779..47865794
+
Mm9::chr17:47865796..47865822,+p@chr17:47865796..47865822
+
Mm9::chr17:47866199..47866204,+p@chr17:47866199..47866204
+
Mm9::chr17:47866212..47866223,+p@chr17:47866212..47866223
+
Mm9::chr17:47866224..47866240,+p@chr17:47866224..47866240
+
Mm9::chr17:47866243..47866292,+p@chr17:47866243..47866292
+
Mm9::chr17:47866305..47866315,-p@chr17:47866305..47866315
-
Mm9::chr17:47867029..47867086,+p@chr17:47867029..47867086
+
Mm9::chr17:47867091..47867101,+p@chr17:47867091..47867101
+
Mm9::chr17:47867102..47867105,+p@chr17:47867102..47867105
+
Mm9::chr17:47867547..47867554,+p@chr17:47867547..47867554
+
Mm9::chr17:47867590..47867591,+p@chr17:47867590..47867591
+
Mm9::chr17:47867611..47867620,+p@chr17:47867611..47867620
+
Mm9::chr17:47867637..47867650,+p@chr17:47867637..47867650
+
Mm9::chr17:47867669..47867677,+p@chr17:47867669..47867677
+
Mm9::chr17:47867807..47867817,+p@chr17:47867807..47867817
+
Mm9::chr17:47868151..47868180,+p@chr17:47868151..47868180
+
Mm9::chr17:47869340..47869361,+p@chr17:47869340..47869361
+
Mm9::chr17:47869368..47869402,+p@chr17:47869368..47869402
+
Mm9::chr17:47869409..47869419,+p@chr17:47869409..47869419
+
Mm9::chr17:47869903..47869914,+p@chr17:47869903..47869914
+
Mm9::chr17:47869919..47869922,+p@chr17:47869919..47869922
+
Mm9::chr17:47869927..47870007,+p@chr17:47869927..47870007
+
Mm9::chr17:47870008..47870009,+p@chr17:47870008..47870009
+
Mm9::chr17:47870010..47870020,+p@chr17:47870010..47870020
+
Mm9::chr17:47870700..47870704,+p@chr17:47870700..47870704
+
Mm9::chr17:47870708..47870733,+p@chr17:47870708..47870733
+
Mm9::chr17:47870752..47870760,+p@chr17:47870752..47870760
+
Mm9::chr17:47870762..47870779,+p@chr17:47870762..47870779
+
Mm9::chr17:47871127..47871150,+p@chr17:47871127..47871150
+
Mm9::chr17:47871151..47871184,+p@chr17:47871151..47871184
+
Mm9::chr17:47871188..47871196,+p@chr17:47871188..47871196
+
Mm9::chr17:47871206..47871247,+p@chr17:47871206..47871247
+
Mm9::chr17:47871261..47871273,+p@chr17:47871261..47871273
+
Mm9::chr17:47871278..47871286,+p@chr17:47871278..47871286
+
Mm9::chr17:47871288..47871303,+p@chr17:47871288..47871303
+
Mm9::chr17:47871307..47871354,+p@chr17:47871307..47871354
+
Mm9::chr17:47871355..47871370,+p@chr17:47871355..47871370
+
Mm9::chr17:47871387..47871390,+p@chr17:47871387..47871390
+
Mm9::chr17:47871424..47871430,-p@chr17:47871424..47871430
-
Mm9::chr17:53963118..53963120,-p@chr17:53963118..53963120
-
Mm9::chr17:53963433..53963462,-p@chr17:53963433..53963462
-
Mm9::chr17:53985133..53985149,-p1@Sult1c2
Mm9::chr17:6961292..6961300,-p@chr17:6961292..6961300
-
Mm9::chr18:36525428..36525439,+p4@0610010O12Rik
Mm9::chr18:36525466..36525477,+p3@0610010O12Rik
Mm9::chr19:10299737..10299752,-p@chr19:10299737..10299752
-
Mm9::chr19:10759665..10759699,-p@chr19:10759665..10759699
-
Mm9::chr19:11830344..11830355,+p@chr19:11830344..11830355
+
Mm9::chr19:30189839..30189855,-p@chr19:30189839..30189855
-
Mm9::chr19:39135542..39135573,+p@chr19:39135542..39135573
+
Mm9::chr19:44088335..44088344,-p@chr19:44088335..44088344
-
Mm9::chr19:7684955..7684973,-p@chr19:7684955..7684973
-
Mm9::chr1:121903590..121903605,+p2@Sctr
Mm9::chr1:121903622..121903636,+p1@Sctr
Mm9::chr1:121903649..121903660,+p3@Sctr
Mm9::chr1:133558525..133558551,+p4@Ctse
Mm9::chr1:133568858..133568871,+p@chr1:133568858..133568871
+
Mm9::chr1:133571437..133571453,+p@chr1:133571437..133571453
+
Mm9::chr1:133571493..133571515,+p@chr1:133571493..133571515
+
Mm9::chr1:133571522..133571537,+p@chr1:133571522..133571537
+
Mm9::chr1:133571607..133571635,+p@chr1:133571607..133571635
+
Mm9::chr1:133571653..133571663,+p@chr1:133571653..133571663
+
Mm9::chr1:169302548..169302553,-p@chr1:169302548..169302553
-
Mm9::chr1:189767213..189767224,+p@chr1:189767213..189767224
+
Mm9::chr1:40637366..40637376,+p@chr1:40637366..40637376
+
Mm9::chr2:131780729..131780744,-p@chr2:131780729..131780744
-
Mm9::chr2:155214829..155214834,+p@chr2:155214829..155214834
+
Mm9::chr2:178698913..178698915,+p@chr2:178698913..178698915
+
Mm9::chr2:25557549..25557556,+p@chr2:25557549..25557556
+
Mm9::chr3:105916279..105916296,+p1@Chia
Mm9::chr3:105934778..105934787,+p@chr3:105934778..105934787
+
Mm9::chr3:105934843..105934878,+p@chr3:105934843..105934878
+
Mm9::chr3:105934882..105934977,+p@chr3:105934882..105934977
+
Mm9::chr3:29911808..29911833,-p8@Mecom
Mm9::chr3:69663797..69663823,-p1@1110032A04Rik
Mm9::chr3:91884307..91884334,-p@chr3:91884307..91884334
-
Mm9::chr4:120997517..120997533,-p1@Gm12888
Mm9::chr4:148038430..148038450,+p@chr4:148038430..148038450
+
Mm9::chr4:55541446..55541450,-p@chr4:55541446..55541450
-
Mm9::chr4:76097357..76097367,+p@chr4:76097357..76097367
+
Mm9::chr4:87452167..87452178,-p8@Mllt3
Mm9::chr5:115898893..115898899,+p@chr5:115898893..115898899
+
Mm9::chr5:115916161..115916168,+p2@Pla2g1b
Mm9::chr5:115916184..115916198,+p4@Pla2g1b
Mm9::chr5:115916243..115916303,+p1@Pla2g1b
Mm9::chr5:115918454..115918467,+p@chr5:115918454..115918467
+
Mm9::chr5:115918485..115918498,+p@chr5:115918485..115918498
+
Mm9::chr5:115920790..115920802,+p@chr5:115920790..115920802
+
Mm9::chr5:115920820..115920837,+p@chr5:115920820..115920837
+
Mm9::chr5:115920845..115920850,+p@chr5:115920845..115920850
+
Mm9::chr5:115920862..115920874,+p@chr5:115920862..115920874
+
Mm9::chr5:115920879..115920889,+p@chr5:115920879..115920889
+
Mm9::chr5:115920897..115920926,+p@chr5:115920897..115920926
+
Mm9::chr5:115921700..115921702,+p@chr5:115921700..115921702
+
Mm9::chr5:115921990..115922012,+p@chr5:115921990..115922012
+
Mm9::chr5:115922017..115922024,+p@chr5:115922017..115922024
+
Mm9::chr5:115922031..115922089,+p@chr5:115922031..115922089
+
Mm9::chr5:115922064..115922126,-p@chr5:115922064..115922126
-
Mm9::chr5:115924513..115924524,+p@chr5:115924513..115924524
+
Mm9::chr5:115924527..115924584,+p@chr5:115924527..115924584
+
Mm9::chr5:115924582..115924587,-p@chr5:115924582..115924587
-
Mm9::chr5:115924587..115924590,+p@chr5:115924587..115924590
+
Mm9::chr5:115924621..115924647,+p@chr5:115924621..115924647
+
Mm9::chr5:115924657..115924671,+p@chr5:115924657..115924671
+
Mm9::chr5:115924682..115924691,+p@chr5:115924682..115924691
+
Mm9::chr5:115924719..115924726,-p@chr5:115924719..115924726
-
Mm9::chr5:124896948..124896972,+p6@Setd8
Mm9::chr5:28694780..28694824,+p@chr5:28694780..28694824
+
Mm9::chr5:31272143..31272160,+p@chr5:31272143..31272160
+
Mm9::chr6:113669444..113669462,-p2@Ghrl
Mm9::chr6:113669874..113669877,-p1@Ghrl
Mm9::chr6:115486987..115487016,-p@chr6:115486987..115487016
-
Mm9::chr6:87296342..87296361,-p@chr6:87296342..87296361
-
Mm9::chr6:87299037..87299067,-p@chr6:87299037..87299067
-
Mm9::chr6:87300898..87300915,-p1@Gkn1
Mm9::chr6:87323351..87323364,+p1@Gkn2
Mm9::chr6:87325744..87325762,+p@chr6:87325744..87325762
+
Mm9::chr6:87325782..87325790,+p@chr6:87325782..87325790
+
Mm9::chr6:87325802..87325816,+p@chr6:87325802..87325816
+
Mm9::chr6:87328121..87328135,+p@chr6:87328121..87328135
+
Mm9::chr6:87329279..87329286,+p@chr6:87329279..87329286
+
Mm9::chr6:87329357..87329368,+p@chr6:87329357..87329368
+
Mm9::chr6:87329458..87329493,-p@chr6:87329458..87329493
-
Mm9::chr6:87338840..87338856,-p1@Gkn3
Mm9::chr7:148822512..148822522,-p@chr7:148822512..148822522
-
Mm9::chr7:148822638..148822643,-p@chr7:148822638..148822643
-
Mm9::chr7:148822698..148822705,-p@chr7:148822698..148822705
-
Mm9::chr7:148822767..148822776,-p@chr7:148822767..148822776
-
Mm9::chr7:148822779..148822809,-p@chr7:148822779..148822809
-
Mm9::chr7:148822831..148822844,-p@chr7:148822831..148822844
-
Mm9::chr7:148822935..148822944,-p@chr7:148822935..148822944
-
Mm9::chr7:148822975..148823003,-p@chr7:148822975..148823003
-
Mm9::chr7:148823016..148823036,-p@chr7:148823016..148823036
-
Mm9::chr7:148823048..148823075,-p@chr7:148823048..148823075
-
Mm9::chr7:148823107..148823124,-p@chr7:148823107..148823124
-
Mm9::chr7:148823129..148823136,-p@chr7:148823129..148823136
-
Mm9::chr7:148823145..148823150,-p@chr7:148823145..148823150
-
Mm9::chr7:148823261..148823268,-p@chr7:148823261..148823268
-
Mm9::chr7:148823283..148823288,-p@chr7:148823283..148823288
-
Mm9::chr7:148823568..148823591,-p@chr7:148823568..148823591
-
Mm9::chr7:148823631..148823643,-p@chr7:148823631..148823643
-
Mm9::chr7:148823646..148823680,-p@chr7:148823646..148823680
-
Mm9::chr7:148823758..148823775,-p@chr7:148823758..148823775
-
Mm9::chr7:148823930..148823947,-p@chr7:148823930..148823947
-
Mm9::chr7:148824693..148824707,-p@chr7:148824693..148824707
-
Mm9::chr7:148824749..148824764,-p@chr7:148824749..148824764
-
Mm9::chr7:148824958..148824974,-p@chr7:148824958..148824974
-
Mm9::chr7:148825401..148825428,-p@chr7:148825401..148825428
-
Mm9::chr7:148825840..148825849,-p@chr7:148825840..148825849
-
Mm9::chr7:148825872..148825883,-p@chr7:148825872..148825883
-
Mm9::chr7:148825891..148825914,-p@chr7:148825891..148825914
-
Mm9::chr7:148825980..148825990,-p@chr7:148825980..148825990
-
Mm9::chr7:148826003..148826016,-p@chr7:148826003..148826016
-
Mm9::chr7:148826208..148826222,-p@chr7:148826208..148826222
-
Mm9::chr7:148841288..148841294,-p1@Muc6
Mm9::chr7:148991537..148991544,+p@chr7:148991537..148991544
+
Mm9::chr7:148991554..148991565,+p@chr7:148991554..148991565
+
Mm9::chr7:148991614..148991621,+p@chr7:148991614..148991621
+
Mm9::chr7:148994412..148994426,+p@chr7:148994412..148994426
+
Mm9::chr7:148994429..148994436,+p@chr7:148994429..148994436
+
Mm9::chr7:148994442..148994454,+p@chr7:148994442..148994454
+
Mm9::chr7:148994485..148994523,+p@chr7:148994485..148994523
+
Mm9::chr7:148994527..148994548,+p@chr7:148994527..148994548
+
Mm9::chr7:148995486..148995499,+p@chr7:148995486..148995499
+
Mm9::chr7:148998955..148998963,+p@chr7:148998955..148998963
+
Mm9::chr7:148999635..148999640,+p@chr7:148999635..148999640
+
Mm9::chr7:149004544..149004547,+p@chr7:149004544..149004547
+
Mm9::chr7:149005034..149005043,+p@chr7:149005034..149005043
+
Mm9::chr7:149620837..149620875,+p1@Syt8
Mm9::chr7:26586940..26586944,-p@chr7:26586940..26586944
-
Mm9::chr7:26588450..26588469,-p@chr7:26588450..26588469
-
Mm9::chr7:26601519..26601554,-p1@Cyp2s1
Mm9::chr7:26601567..26601582,-p2@Cyp2s1
Mm9::chr7:26601584..26601587,-p4@Cyp2s1
Mm9::chr7:26601635..26601647,-p5@Cyp2s1
Mm9::chr7:48153554..48153583,+p@chr7:48153554..48153583
+
Mm9::chr7:87534702..87534713,-p@chr7:87534702..87534713
-
Mm9::chr7:87648233..87648251,-p@chr7:87648233..87648251
-
Mm9::chr8:13387475..13387494,-p@chr8:13387475..13387494
-
Mm9::chr8:13388798..13388815,-p@chr8:13388798..13388815
-
Mm9::chr8:13389693..13389702,-p@chr8:13389693..13389702
-
Mm9::chr8:13389859..13389866,-p@chr8:13389859..13389866
-
Mm9::chr8:13390099..13390103,-p@chr8:13390099..13390103
-
Mm9::chr8:13396769..13396783,-p1@Atp4b
Mm9::chr8:40109127..40109136,+p@chr8:40109127..40109136
+
Mm9::chr8:63768125..63768126,-p1@1700001D01Rik
Mm9::chr8:64601903..64601920,-p1@Anxa10
Mm9::chr8:73416651..73416657,-p1@Slc5a5
Mm9::chr8:74281484..74281496,-p@chr8:74281484..74281496
-
Mm9::chr9:110566194..110566198,+p@chr9:110566194..110566198
+
Mm9::chr9:57807802..57807805,+p@chr9:57807802..57807805
+
Mm9::chr9:66871053..66871068,-p@chr9:66871053..66871068
-
Mm9::chr9:78057083..78057106,+p@chr9:78057083..78057106
+
Mm9::chr9:78078486..78078498,+p1@Gsta1
Mm9::chr9:99512887..99512948,+p1@A4gnt
Mm9::chr9:99512964..99512976,+p2@A4gnt
Mm9::chr9:99592598..99592623,-p@chr9:99592598..99592623
-
Mm9::chr9:99617678..99617693,-p1@Cldn18
Mm9::chrM:4870..4907,+p1@ENSMUST00000082397
Mm9::chrX:137442050..137442072,+p2@Vsig1
Mm9::chrX:137442141..137442174,+p1@Vsig1
Mm9::chrX:54045843..54045856,+p@chrX:54045843..54045856
+
Mm9::chrX:54045905..54045937,+p@chrX:54045905..54045937
+
Mm9::chrY:2857172..2857179,+p@chrY:2857172..2857179
+
Mm9::chrY:2858251..2858257,+p@chrY:2858251..2858257
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:54&oldid=2145568"