MCL coexpression mm9:2256

Phase1 CAGE Peaks

	Short description
Mm9::chr19:30026255..30026269,+	p4@Il33
Mm9::chr19:30026298..30026309,+	p5@Il33
Mm9::chr2:30049656..30049663,-	p9@Ccbl1
Mm9::chr7:25440799..25440805,+	p@chr7:25440799..25440805 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0047316	glutamine-phenylpyruvate transaminase activity	0.00306773668792135
GO:0047804	cysteine-S-conjugate beta-lyase activity	0.00306773668792135
GO:0016212	kynurenine-oxoglutarate transaminase activity	0.00306773668792135
GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	0.00306773668792135
GO:0016846	carbon-sulfur lyase activity	0.00552116963075752
GO:0008483	transaminase activity	0.0137961164093854
GO:0016769	transferase activity, transferring nitrogenous groups	0.0153256564215353
GO:0030170	pyridoxal phosphate binding	0.0176191890209396
GO:0019842	vitamin binding	0.0356912280066465
GO:0016829	lyase activity	0.0464405293992843
GO:0048037	cofactor binding	0.0466421952795109

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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