MCL coexpression mm9:203

Phase1 CAGE Peaks

	Short description
Mm9::chr10:126955978..126955991,-	p@chr10:126955978..126955991 -
Mm9::chr10:82417942..82417945,-	p@chr10:82417942..82417945 -
Mm9::chr11:33655044..33655056,-	p@chr11:33655044..33655056 -
Mm9::chr12:100883267..100883273,+	p@chr12:100883267..100883273 +
Mm9::chr12:37542835..37542836,+	p1@ENSMUST00000175257
Mm9::chr12:55236123..55236144,+	p@chr12:55236123..55236144 +
Mm9::chr12:82049738..82049742,+	p@chr12:82049738..82049742 +
Mm9::chr13:54285418..54285432,-	p@chr13:54285418..54285432 -
Mm9::chr13:97960589..97960594,-	p@chr13:97960589..97960594 -
Mm9::chr14:51427165..51427186,+	p2@Rpph1
Mm9::chr15:47371528..47371540,+	p@chr15:47371528..47371540 +
Mm9::chr15:98676191..98676203,-	p@chr15:98676191..98676203 -
Mm9::chr17:23957909..23957992,+	p@chr17:23957909..23957992 +
Mm9::chr17:39985095..39985135,+	p@chr17:39985095..39985135 +
Mm9::chr17:39985471..39985552,+	p@chr17:39985471..39985552 +
Mm9::chr17:39985696..39985709,+	p@chr17:39985696..39985709 +
Mm9::chr17:50559473..50559520,-	p@chr17:50559473..50559520 -
Mm9::chr17:71313113..71313143,+	p@chr17:71313113..71313143 +
Mm9::chr19:46157555..46157566,+	p@chr19:46157555..46157566 +
Mm9::chr19:61274672..61274684,-	p@chr19:61274672..61274684 -
Mm9::chr1:87761176..87761190,-	p@chr1:87761176..87761190 -
Mm9::chr2:174092554..174092558,-	p1@Mir296
Mm9::chr3:37380338..37380362,+	p3@ENSMUST00000121415
Mm9::chr3:89823119..89823134,-	p3@Ubap2l
Mm9::chr4:138894119..138894145,+	p1@ENSMUST00000175168
Mm9::chr4:41154059..41154070,-	p@chr4:41154059..41154070 -
Mm9::chr4:45359494..45359529,-	p@chr4:45359494..45359529 -
Mm9::chr4:78419945..78419958,+	p@chr4:78419945..78419958 +
Mm9::chr5:110029960..110029965,+	p@chr5:110029960..110029965 +
Mm9::chr5:115301801..115301827,+	p@chr5:115301801..115301827 +
Mm9::chr5:117660103..117660133,+	p@chr5:117660103..117660133 +
Mm9::chr5:130297676..130297688,+	p@chr5:130297676..130297688 +
Mm9::chr5:143916652..143916673,-	p@chr5:143916652..143916673 -
Mm9::chr5:145893809..145893838,-	p@chr5:145893809..145893838 -
Mm9::chr5:17282593..17282616,-	p1@Mir5109
Mm9::chr5:23001897..23001913,+	p@chr5:23001897..23001913 +
Mm9::chr6:11876758..11876790,+	p6@Phf14
Mm9::chr6:124665248..124665251,+	p1@ENSMUST00000158210
Mm9::chr6:44742926..44742928,+	p@chr6:44742926..44742928 +
Mm9::chr7:137977942..137977971,+	p1@ENSMUST00000175357
Mm9::chr7:54108537..54108541,+	p@chr7:54108537..54108541 +
Mm9::chr8:3177033..3177059,-	p@chr8:3177033..3177059 -
Mm9::chr9:113665458..113665471,+	p@chr9:113665458..113665471 +
Mm9::chr9:21043754..21043783,-	p2@Keap1
Mm9::chrM:13975..13985,-	p10@uc012hdm.1
Mm9::chrX:100663351..100663375,-	p@chrX:100663351..100663375 -

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0007000	nucleolus organization and biogenesis	0.0344846295698197
GO:0045604	regulation of epidermal cell differentiation	0.0344846295698197
GO:0015030	Cajal body	0.0344846295698197
GO:0004372	glycine hydroxymethyltransferase activity	0.0344846295698197
GO:0009048	dosage compensation, by inactivation of X chromosome	0.0344846295698197
GO:0045682	regulation of epidermis development	0.0344846295698197
GO:0007549	dosage compensation	0.0344846295698197
GO:0030532	small nuclear ribonucleoprotein complex	0.0368713136867206

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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