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Coexpression cluster:C603

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Full id: C603_Monocytederived_Hair_Aortic_Hepatocyte_Adipocyte_leiomyoma_mesenchymal



Phase1 CAGE Peaks

Hg19::chr19:13049939..13049976,+p11@CALR
Hg19::chr19:13050317..13050410,+p2@CALR
Hg19::chr19:13050879..13050931,+p10@CALR
Hg19::chr19:13051052..13051073,+p12@CALR
Hg19::chr19:13051092..13051103,+p17@CALR
Hg19::chr19:13051106..13051123,+p4@CALR
Hg19::chr19:13051128..13051144,+p15@CALR
Hg19::chr19:13051152..13051172,+p8@CALR
Hg19::chr19:13051206..13051244,+p5@CALR
Hg19::chr19:13051346..13051391,+p@chr19:13051346..13051391
+
Hg19::chr19:13051420..13051440,+p@chr19:13051420..13051440
+
Hg19::chr19:13051592..13051609,+p@chr19:13051592..13051609
+
Hg19::chr19:13051628..13051646,+p@chr19:13051628..13051646
+
Hg19::chr19:13054338..13054381,+p7@CALR
Hg19::chr19:13054915..13054933,+p@chr19:13054915..13054933
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
trunk mesenchyme8.35e-13143
epithelial tube4.36e-11118
somite2.07e-1083
paraxial mesoderm2.07e-1083
presomitic mesoderm2.07e-1083
presumptive segmental plate2.07e-1083
trunk paraxial mesoderm2.07e-1083
presumptive paraxial mesoderm2.07e-1083
multilaminar epithelium3.18e-1082
vasculature5.34e-1079
vascular system5.34e-1079
unilaminar epithelium5.93e-10138
dermomyotome6.00e-1070
artery6.88e-1042
arterial blood vessel6.88e-1042
arterial system6.88e-1042
vessel8.62e-0969
splanchnic layer of lateral plate mesoderm1.00e-0884
blood vessel1.36e-0860
epithelial tube open at both ends1.36e-0860
blood vasculature1.36e-0860
vascular cord1.36e-0860
skeletal muscle tissue1.60e-0861
striated muscle tissue1.60e-0861
myotome1.60e-0861
muscle tissue9.31e-0863
musculature9.31e-0863
musculature of body9.31e-0863
systemic artery1.33e-0733
systemic arterial system1.33e-0733
trunk3.05e-07216
mesoderm3.69e-07448
mesoderm-derived structure3.69e-07448
presumptive mesoderm3.69e-07448


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.