Personal tools

UBERON:0005311

From FANTOM5_SSTAR

Revision as of 17:22, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:mammary placode
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE2:Mm9::chr4:118640697..118640705,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640697..118640705, +
1.87e-86FFCP PHASE2:Mm9::chr5:88209177..88209180,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209177..88209180, +
1.87e-86FFCP PHASE1:Mm9::chr5:88361418..88361423,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88361418..88361423, +
1.87e-86FFCP PHASE1:Mm9::chr19:56051165..56051186,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:56051165..56051186, +
1.87e-86FFCP PHASE2:Mm9::chr2:101613203..101613206,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:101613203..101613206, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393839..103393860,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393839..103393860, -
1.87e-86FFCP PHASE2:Mm9::chr5:88109833..88109851,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109833..88109851, +
1.87e-86FFCP PHASE1:Mm9::chr4:118634471..118634476,+#_30b6d7c8bf53f346980477d3b2cc2429p9@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:98312638..98312662,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312638..98312662, -
1.87e-86FFCP PHASE2:Mm9::chr5:88357286..88357299,+#_30b6d7c8bf53f346980477d3b2cc2429p4@Csn3
1.87e-86FFCP PHASE1:Mm9::chr4:118641223..118641237,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118641223..118641237, -
1.87e-86FFCP PHASE2:Mm9::chr9:47431371..47431374,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:47431371..47431374, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123821..88123845,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123821..88123845, +
1.87e-86FFCP PHASE2:Mm9::chr4:118634296..118634303,+#_30b6d7c8bf53f346980477d3b2cc2429p6@Lao1
1.87e-86FFCP PHASE2:Mm9::chr8:69495848..69495849,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:69495848..69495849, -
1.87e-86FFCP PHASE1:Mm9::chr5:88215700..88215705,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215700..88215705, +
1.87e-86FFCP PHASE1:Mm9::chr5:88109913..88109924,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109913..88109924, -
1.87e-86FFCP PHASE1:Mm9::chr8:98629001..98629006,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:98629001..98629006, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393830..103393851,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393830..103393851, +
1.87e-86FFCP PHASE2:Mm9::chr6:51296751..51296773,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:51296751..51296773, -
1.87e-86FFCP PHASE2:Mm9::chr5:88206236..88206252,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206236..88206252, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358899..88358903,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358899..88358903, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123723..88123745,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123723..88123745, -
1.87e-86FFCP PHASE2:Mm9::chr11:109658690..109658694,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109658690..109658694, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393382..103393391,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393382..103393391, -
1.87e-86FFCP PHASE2:Mm9::chr5:88104026..88104055,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88104026..88104055, +
1.87e-86FFCP PHASE2:Mm9::chr10:81564930..81564939,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:81564930..81564939, +
1.87e-86FFCP PHASE2:Mm9::chr5:88217723..88217733,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217723..88217733, +
1.87e-86FFCP PHASE2:Mm9::chr3:94221876..94221878,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:94221876..94221878, -
1.87e-86FFCP PHASE1:Mm9::chr4:118636782..118636786,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636782..118636786, +
1.87e-86FFCP PHASE2:Mm9::chr11:6536708..6536724,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6536708..6536724, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123681..88123725,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123681..88123725, +
1.87e-86FFCP PHASE1:Mm9::chr5:88213608..88213623,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213608..88213623, -
1.87e-86FFCP PHASE1:Mm9::chr5:88106054..88106056,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88106054..88106056, +
1.87e-86FFCP PHASE1:Mm9::chr1:40637208..40637219,+#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc9a4
1.87e-86FFCP PHASE1:Mm9::chr5:88123602..88123609,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123602..88123609, -
1.87e-86FFCP PHASE1:Mm9::chr12:53708625..53708630,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:53708625..53708630, +
1.87e-86FFCP PHASE2:Mm9::chr15:103393227..103393240,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393227..103393240, -
1.87e-86FFCP PHASE2:Mm9::chr5:88099935..88099953,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88099935..88099953, -
1.87e-86FFCP PHASE1:Mm9::chr3:79647358..79647364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE2:Mm9::chr15:98313162..98313173,-#_30b6d7c8bf53f346980477d3b2cc2429p2@Lalba
1.87e-86FFCP PHASE2:Mm9::chr5:88215632..88215662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215632..88215662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88204791..88204807,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204791..88204807, +
1.87e-86FFCP PHASE1:Mm9::chr11:6535548..6535558,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535548..6535558, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123567..88123572,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123567..88123572, +
1.87e-86FFCP PHASE2:Mm9::chr5:73491357..73491360,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:73491357..73491360, -
1.87e-86FFCP PHASE1:Mm9::chr5:88209981..88209984,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209981..88209984, +
1.87e-86FFCP PHASE1:Mm9::chr5:88100053..88100078,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100053..88100078, -
1.87e-86FFCP PHASE2:Mm9::chr13:23557637..23557642,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:23557637..23557642, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358983..88358986,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358983..88358986, +
1.87e-86FFCP PHASE1:Mm9::chr8:67022646..67022651,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:67022646..67022651, +
1.87e-86FFCP PHASE1:Mm9::chr4:19765092..19765098,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:19765092..19765098, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393361..103393372,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393361..103393372, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217757..88217772,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217757..88217772, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121763..88121767,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121763..88121767, -
1.87e-86FFCP PHASE2:Mm9::chr4:19765092..19765098,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:19765092..19765098, -
1.87e-86FFCP PHASE2:Mm9::chr9:77686655..77686662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686655..77686662, +
1.87e-86FFCP PHASE2:Mm9::chr5:88210852..88210888,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210852..88210888, +
1.87e-86FFCP PHASE2:Mm9::chr2:151795763..151795765,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:151795763..151795765, +
1.87e-86FFCP PHASE2:Mm9::chr5:151567427..151567434,+#_30b6d7c8bf53f346980477d3b2cc2429p10@Pds5b
1.87e-86FFCP PHASE1:Mm9::chr5:88125200..88125204,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125200..88125204, -
1.87e-86FFCP PHASE2:Mm9::chr15:74707088..74707089,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:74707088..74707089, -
1.87e-86FFCP PHASE2:Mm9::chr5:88111566..88111575,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88111566..88111575, +
1.87e-86FFCP PHASE1:Mm9::chr9:67138095..67138099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:67138095..67138099, -
1.87e-86FFCP PHASE1:Mm9::chr5:88206460..88206469,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206460..88206469, +
1.87e-86FFCP PHASE1:Mm9::chr5:88096251..88096262,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096251..88096262, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358835..88358840,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358835..88358840, +
1.87e-86FFCP PHASE2:Mm9::chr19:56051165..56051186,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:56051165..56051186, +
1.87e-86FFCP PHASE1:Mm9::chr8:47396093..47396097,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123986..88123989,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123986..88123989, +
1.87e-86FFCP PHASE2:Mm9::chr4:118636395..118636401,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636395..118636401, +
1.87e-86FFCP PHASE1:Mm9::chr15:24986864..24986868,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:24986864..24986868, -
1.87e-86FFCP PHASE2:Mm9::chr5:88209021..88209051,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209021..88209051, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358988..88358999,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358988..88358999, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123821..88123845,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123821..88123845, +
1.87e-86FFCP PHASE1:Mm9::chr13:23557637..23557642,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:23557637..23557642, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393725..103393729,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393725..103393729, -
1.87e-86FFCP PHASE2:Mm9::chr5:88107041..88107085,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88107041..88107085, +
1.87e-86FFCP PHASE1:Mm9::chr9:47431371..47431374,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:47431371..47431374, +
1.87e-86FFCP PHASE1:Mm9::chr5:38893346..38893365,-#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr4:118627452..118627463,-#_30b6d7c8bf53f346980477d3b2cc2429p2@ENSMUST00000155069, p2@uc008ulc.1
1.87e-86FFCP PHASE1:Mm9::chr15:98311094..98311111,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98311094..98311111, -
1.87e-86FFCP PHASE2:Mm9::chr2:99574978..99574987,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:99574978..99574987, +
1.87e-86FFCP PHASE1:Mm9::chr4:118640438..118640443,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640438..118640443, +
1.87e-86FFCP PHASE2:Mm9::chr11:6538794..6538800,-#_30b6d7c8bf53f346980477d3b2cc2429p4@Wap
1.87e-86FFCP PHASE2:Mm9::chr1:23404398..23404401,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007amc.1
1.87e-86FFCP PHASE2:Mm9::chr5:88123730..88123744,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123730..88123744, +
1.87e-86FFCP PHASE1:Mm9::chr5:88215650..88215658,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215650..88215658, -
1.87e-86FFCP PHASE1:Mm9::chr5:88108071..88108075,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88108071..88108075, -
1.87e-86FFCP PHASE2:Mm9::chr4:118636825..118636828,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636825..118636828, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393712..103393723,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393712..103393723, -
1.87e-86FFCP PHASE2:Mm9::chr5:88204791..88204807,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204791..88204807, +
1.87e-86FFCP PHASE1:Mm9::chr5:88358854..88358874,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358854..88358874, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123681..88123725,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123681..88123725, +
1.87e-86FFCP PHASE2:Mm9::chr8:39536780..39536784,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:39536780..39536784, -
1.87e-86FFCP PHASE2:Mm9::chr11:109616343..109616364,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109616343..109616364, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005311&oldid=1833204"