Personal tools

UBERON:0003909

From FANTOM5_SSTAR

Revision as of 17:19, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:sinusoid
Definition:"small blood vessel similar to a capillary but with a discontinuous endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)]
Xrefs:
links:

FMA:63131

ZFA:0005261
Synonyms: "sinusoidal blood vessel" EXACT []
"sinusoidal blood vessel endothelium" EXACT [ZFA:0005261]
Comments:the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001981(blood vessel)



Children

is a:UBERON:0001281 (hepatic sinusoid)
part of:CL:0002262 (endothelial cell of sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003909 (sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_fbf691b76dbf51aee16a84a4e9943b11p2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_fbf691b76dbf51aee16a84a4e9943b11p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_2ce8c5f821a8300836fe15d6fbf66557p4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:113550715..113550722, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_2ce8c5f821a8300836fe15d6fbf66557p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:93499468..93499494,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_2ce8c5f821a8300836fe15d6fbf66557p4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:115280630..115280662, +
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_2ce8c5f821a8300836fe15d6fbf66557p4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_2ce8c5f821a8300836fe15d6fbf66557p8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_2ce8c5f821a8300836fe15d6fbf66557p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:65159026..65159034, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003909&oldid=1833020"