Personal tools

UBERON:0001723

From FANTOM5_SSTAR

Revision as of 17:12, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:tongue
Definition:"The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue]
Xrefs:
links:

AAO:0010360
BTO:0001385
EFO:0000833
EHDAA:9144
EHDAA2:0002062
EMAPA:17185
EMAPA:18870
EV:0100058
FMA:54640
GAID:816
[1]
MA:0000347
MAT:0000040
MESH:A.14.549.885
MIAA:0000040
ncithesaurus:Tongue
OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
SCTID:181226008
VHOG:0000419
XAO:0000446

ZFA:0005333
Comments:editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. Taxon notes: Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods. Development notes: The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions
Alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0000078(mixed ectoderm/mesoderm/endoderm-derived structure)
develops_from:UBERON:0008814(pharyngeal arch system),UBERON:0010056(future tongue)
part_of:UBERON:0000165(mouth),UBERON:0001033(gustatory system)



Children

derives from:FF:0010059 (human tongue - fetal sample),FF:0010203 (human tongue - adult sample),FF:0011310 (mouse tongue- adult sample),FF:0100786 (tongue cancer cell line sample)
part of:UBERON:0005020 (mucosa of tongue),UBERON:0009471 (dorsum of tongue),FF:0010059 (human tongue - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001723 (tongue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr5:147715119..147715124,+#_239beb11de19d4d6d6ba5d383b7293fap1@SPINK9
8.98e-131FFCP PHASE2:Hg19::chr5:147715119..147715124,+#_239beb11de19d4d6d6ba5d383b7293fap1@SPINK9
6.24e-88FFCP PHASE1:Hg19::chr2:106128079..106128106,+#_abc98807de78ecb1676606899a9410fdp@chr2:106128079..106128106, +
6.24e-88FFCP PHASE1:Hg19::chr13:103555720..103555725,+#_abc98807de78ecb1676606899a9410fdp@chr13:103555720..103555725, +
6.24e-88FFCP PHASE2:Hg19::chr2:106128079..106128106,+#_abc98807de78ecb1676606899a9410fdp@chr2:106128079..106128106, +
6.24e-88FFCP PHASE2:Hg19::chr13:103555720..103555725,+#_abc98807de78ecb1676606899a9410fdp@chr13:103555720..103555725, +
6.24e-88FFCP PHASE1:Hg19::chr9:136184568..136184572,+#_abc98807de78ecb1676606899a9410fdp1@LCN1P2
6.24e-88FFCP PHASE2:Hg19::chr9:136184568..136184572,+#_abc98807de78ecb1676606899a9410fdp1@LCN1P2
9.74e-88FFCP PHASE1:Hg19::chr12:53243246..53243253,-#_e8d0b46dc5be08005b66811efca808fap3@KRT78
9.74e-88FFCP PHASE2:Hg19::chr12:53243246..53243253,-#_e8d0b46dc5be08005b66811efca808fap3@KRT78
9.74e-88FFCP PHASE2:Hg19::chr20:2321399..2321407,+#_e8d0b46dc5be08005b66811efca808fap@chr20:2321399..2321407, +
9.74e-88FFCP PHASE2:Hg19::chr11:1955193..1955200,+#_e8d0b46dc5be08005b66811efca808fap23@TNNT3
9.74e-88FFCP PHASE2:Hg19::chr19:36018336..36018343,-#_e8d0b46dc5be08005b66811efca808fap@chr19:36018336..36018343, -
9.74e-88FFCP PHASE1:Hg19::chr11:1955193..1955200,+#_e8d0b46dc5be08005b66811efca808fap23@TNNT3
9.74e-88FFCP PHASE1:Hg19::chr20:2321399..2321407,+#_e8d0b46dc5be08005b66811efca808fap@chr20:2321399..2321407, +
9.74e-88FFCP PHASE1:Hg19::chr19:36018336..36018343,-#_e8d0b46dc5be08005b66811efca808fap@chr19:36018336..36018343, -
1.52e-87FFCP PHASE2:Hg19::chr20:31829188..31829201,+#_866284c87d95d001372f4274d4ebfed1p@chr20:31829188..31829201, +
1.52e-87FFCP PHASE1:Hg19::chr9:138415792..138415799,+#_866284c87d95d001372f4274d4ebfed1p@chr9:138415792..138415799, +
1.52e-87FFCP PHASE1:Hg19::chr6:17280912..17280921,+#_866284c87d95d001372f4274d4ebfed1p@chr6:17280912..17280921, +
1.52e-87FFCP PHASE2:Hg19::chr9:138415792..138415799,+#_866284c87d95d001372f4274d4ebfed1p@chr9:138415792..138415799, +
1.52e-87FFCP PHASE2:Hg19::chr6:17280912..17280921,+#_866284c87d95d001372f4274d4ebfed1p@chr6:17280912..17280921, +
1.52e-87FFCP PHASE1:Hg19::chr12:53242592..53242631,-#_866284c87d95d001372f4274d4ebfed1p4@KRT78
1.52e-87FFCP PHASE2:Hg19::chr4:71347512..71347523,+#_866284c87d95d001372f4274d4ebfed1p@chr4:71347512..71347523, +
1.52e-87FFCP PHASE2:Hg19::chr12:53242592..53242631,-#_866284c87d95d001372f4274d4ebfed1p4@KRT78
1.52e-87FFCP PHASE1:Hg19::chr4:71347512..71347523,+#_866284c87d95d001372f4274d4ebfed1p@chr4:71347512..71347523, +
1.52e-87FFCP PHASE1:Hg19::chr12:3660787..3660789,-#_866284c87d95d001372f4274d4ebfed1p@chr12:3660787..3660789, -
1.52e-87FFCP PHASE2:Hg19::chr12:3660787..3660789,-#_866284c87d95d001372f4274d4ebfed1p@chr12:3660787..3660789, -
1.52e-87FFCP PHASE1:Hg19::chr20:31829188..31829201,+#_866284c87d95d001372f4274d4ebfed1p@chr20:31829188..31829201, +
3.07e-86FFCP PHASE2:Mm9::chr2:153700714..153700723,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp2@Bpifb2
3.07e-86FFCP PHASE1:Mm9::chr2:154026088..154026101,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp5@Bpifb1
3.07e-86FFCP PHASE2:Mm9::chr8:27934890..27934902,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr8:27934890..27934902, -
3.07e-86FFCP PHASE1:Mm9::chr8:74245929..74245933,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp10@Fcho1
3.07e-86FFCP PHASE1:Mm9::chr19:34045308..34045320,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34045308..34045320, +
3.07e-86FFCP PHASE1:Mm9::chr7:149031277..149031282,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr7:149031277..149031282, +
3.07e-86FFCP PHASE2:Mm9::chr2:120942174..120942183,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:120942174..120942183, -
3.07e-86FFCP PHASE1:Mm9::chr8:27934890..27934902,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr8:27934890..27934902, -
3.07e-86FFCP PHASE1:Mm9::chr1:16804330..16804337,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr1:16804330..16804337, +
3.07e-86FFCP PHASE1:Mm9::chr19:34035674..34035677,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp3@Lipf
3.07e-86FFCP PHASE1:Mm9::chr16:22918005..22918008,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp12@Fetub
3.07e-86FFCP PHASE2:Mm9::chr19:34043253..34043264,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34043253..34043264, +
3.07e-86FFCP PHASE1:Mm9::chr2:129864186..129864212,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:129864186..129864212, +
3.07e-86FFCP PHASE2:Mm9::chr11:99946757..99946762,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp4@Krt32
3.07e-86FFCP PHASE1:Mm9::chr17:24092235..24092269,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp1@Sbpl
3.07e-86FFCP PHASE1:Mm9::chr19:34041399..34041412,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34041399..34041412, -
3.07e-86FFCP PHASE2:Mm9::chr2:154026088..154026101,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp5@Bpifb1
3.07e-86FFCP PHASE2:Mm9::chr19:34050959..34050968,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34050959..34050968, +
3.07e-86FFCP PHASE1:Mm9::chr16:18588865..18588877,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr16:18588865..18588877, -
3.07e-86FFCP PHASE2:Mm9::chr6:93765798..93765806,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr6:93765798..93765806, -
3.07e-86FFCP PHASE1:Mm9::chr5:64359159..64359160,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr5:64359159..64359160, +
3.07e-86FFCP PHASE2:Mm9::chr8:95903671..95903681,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp3@Ces1h
3.07e-86FFCP PHASE1:Mm9::chr11:99699383..99699387,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp1@2300003K06Rik
3.07e-86FFCP PHASE2:Mm9::chr18:70404027..70404032,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr18:70404027..70404032, -
3.07e-86FFCP PHASE2:Mm9::chr8:112138317..112138321,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp2@Pkd1l3
3.07e-86FFCP PHASE2:Mm9::chr2:120942190..120942201,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:120942190..120942201, -
3.07e-86FFCP PHASE1:Mm9::chr4:132626792..132626797,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr4:132626792..132626797, -
3.07e-86FFCP PHASE1:Mm9::chr2:153700714..153700723,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp2@Bpifb2
3.07e-86FFCP PHASE1:Mm9::chr1:16804378..16804385,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr1:16804378..16804385, +
3.07e-86FFCP PHASE1:Mm9::chr16:22918330..22918340,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp11@Fetub
3.07e-86FFCP PHASE1:Mm9::chr6:93765798..93765806,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr6:93765798..93765806, -
3.07e-86FFCP PHASE2:Mm9::chr19:34045246..34045251,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34045246..34045251, +
3.07e-86FFCP PHASE2:Mm9::chr7:149031277..149031282,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr7:149031277..149031282, +
3.07e-86FFCP PHASE1:Mm9::chr2:129870352..129870357,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:129870352..129870357, +
3.07e-86FFCP PHASE1:Mm9::chr18:70404027..70404032,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr18:70404027..70404032, -
3.07e-86FFCP PHASE1:Mm9::chr1:36155397..36155406,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr1:36155397..36155406, -
3.07e-86FFCP PHASE1:Mm9::chr11:99946757..99946762,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp4@Krt32
3.07e-86FFCP PHASE1:Mm9::chr17:24092296..24092324,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp2@Sbpl
3.07e-86FFCP PHASE1:Mm9::chr19:34043253..34043264,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34043253..34043264, +
3.07e-86FFCP PHASE2:Mm9::chr19:34051208..34051222,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34051208..34051222, +
3.07e-86FFCP PHASE2:Mm9::chr2:129870352..129870357,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:129870352..129870357, +
3.07e-86FFCP PHASE2:Mm9::chr19:34039030..34039042,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34039030..34039042, +
3.07e-86FFCP PHASE1:Mm9::chr19:34050959..34050968,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34050959..34050968, +
3.07e-86FFCP PHASE2:Mm9::chr18:70404043..70404049,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp6@2310002L13Rik
3.07e-86FFCP PHASE1:Mm9::chr16:22918343..22918350,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp13@Fetub
3.07e-86FFCP PHASE2:Mm9::chr17:24090258..24090267,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr17:24090258..24090267, +
3.07e-86FFCP PHASE2:Mm9::chr19:34045260..34045268,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34045260..34045268, +
3.07e-86FFCP PHASE2:Mm9::chr16:22918005..22918008,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp12@Fetub
3.07e-86FFCP PHASE1:Mm9::chr2:129874079..129874084,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:129874079..129874084, -
3.07e-86FFCP PHASE1:Mm9::chr18:70404043..70404049,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp6@2310002L13Rik
3.07e-86FFCP PHASE1:Mm9::chr2:154026044..154026056,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp6@Bpifb1
3.07e-86FFCP PHASE2:Mm9::chr1:153097852..153097857,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr1:153097852..153097857, -
3.07e-86FFCP PHASE2:Mm9::chr15:73581208..73581213,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr15:73581208..73581213, +
3.07e-86FFCP PHASE1:Mm9::chr16:42166864..42166867,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr16:42166864..42166867, +
3.07e-86FFCP PHASE2:Mm9::chr8:74245929..74245933,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp10@Fcho1
3.07e-86FFCP PHASE1:Mm9::chr2:120942174..120942183,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:120942174..120942183, -
3.07e-86FFCP PHASE2:Mm9::chr19:34035639..34035644,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp4@Lipf
3.07e-86FFCP PHASE1:Mm9::chr19:34045246..34045251,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34045246..34045251, +
3.07e-86FFCP PHASE2:Mm9::chr2:129874079..129874084,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr2:129874079..129874084, -
3.07e-86FFCP PHASE2:Mm9::chr1:36155397..36155406,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr1:36155397..36155406, -
3.07e-86FFCP PHASE2:Mm9::chr16:18588865..18588877,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr16:18588865..18588877, -
3.07e-86FFCP PHASE2:Mm9::chr19:34039335..34039345,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34039335..34039345, +
3.07e-86FFCP PHASE1:Mm9::chr11:118524835..118524836,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr11:118524835..118524836, -
3.07e-86FFCP PHASE1:Mm9::chr19:34051208..34051222,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34051208..34051222, +
3.07e-86FFCP PHASE2:Mm9::chr18:70404072..70404082,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp3@2310002L13Rik
3.07e-86FFCP PHASE2:Mm9::chr4:132626792..132626797,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr4:132626792..132626797, -
3.07e-86FFCP PHASE1:Mm9::chr8:112138317..112138321,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp2@Pkd1l3
3.07e-86FFCP PHASE2:Mm9::chr16:42166864..42166867,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr16:42166864..42166867, +
3.07e-86FFCP PHASE1:Mm9::chr19:34039030..34039042,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr19:34039030..34039042, +
3.07e-86FFCP PHASE2:Mm9::chr2:154026044..154026056,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp6@Bpifb1
3.07e-86FFCP PHASE2:Mm9::chr17:24092235..24092269,-#_1add36a82df29b3c5ae2e3ee5e2e5b7fp1@Sbpl
3.07e-86FFCP PHASE2:Mm9::chr5:64359159..64359160,+#_1add36a82df29b3c5ae2e3ee5e2e5b7fp@chr5:64359159..64359160, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001723&oldid=1832652"