Personal tools

UBERON:0004237

From FANTOM5_SSTAR

Revision as of 11:11, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0004237 |name=blood vessel smooth muscle |namespace= |def="A portion of smooth muscle tissue that is part of a blood vessel [Obol]." [OBOL:automatic] ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:blood vessel smooth muscle
Definition:"A portion of smooth muscle tissue that is part of a blood vessel [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000710
Synonyms: "blood vessel involuntary muscle" EXACT [OBOL:automatic]
"blood vessel non-striated muscle" EXACT [OBOL:automatic]
"blood vessel smooth muscle tissue" EXACT [OBOL:automatic]
"involuntary muscle of blood vessel" EXACT [OBOL:automatic]
"non-striated muscle of blood vessel" EXACT [OBOL:automatic]
"smooth muscle of blood vessel" EXACT [OBOL:automatic]
"smooth muscle tissue of blood vessel" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001135(smooth muscle tissue)
part_of:UBERON:0001981(blood vessel)



Children

is a:UBERON:0002111 (artery smooth muscle tissue),UBERON:0004178 (aorta smooth muscle tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004237 (blood vessel smooth muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_ebbd76f3f8f080733acaf8f2585eeabap@chr17:14802633..14802637, -
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_ebbd76f3f8f080733acaf8f2585eeabap@chr17:87574327..87574332, +
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_ebbd76f3f8f080733acaf8f2585eeabap5@Adamts2
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_ebbd76f3f8f080733acaf8f2585eeabap@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_ebbd76f3f8f080733acaf8f2585eeabap@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_ebbd76f3f8f080733acaf8f2585eeabap@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_ebbd76f3f8f080733acaf8f2585eeabap@chrX:160839744..160839754, +
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_ebbd76f3f8f080733acaf8f2585eeabap@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_ebbd76f3f8f080733acaf8f2585eeabap@chr8:69228447..69228492, +
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_ebbd76f3f8f080733acaf8f2585eeabap5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_ebbd76f3f8f080733acaf8f2585eeabap@chr8:69228447..69228492, +
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_ebbd76f3f8f080733acaf8f2585eeabap@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_ebbd76f3f8f080733acaf8f2585eeabap@chrX:160839744..160839754, +
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_ebbd76f3f8f080733acaf8f2585eeabap@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_ebbd76f3f8f080733acaf8f2585eeabap@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_ebbd76f3f8f080733acaf8f2585eeabap@chr17:14827154..14827169, -
5.79e-79FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_6913bea811fdc29c6c6bf61c2e6bda3cp@chr1:110429102..110429103, +
5.79e-79FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_6913bea811fdc29c6c6bf61c2e6bda3cp@chr1:110429102..110429103, +
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_f6663f11bcf7d9874050c2eeb34cba66p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_f6663f11bcf7d9874050c2eeb34cba66p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_f6663f11bcf7d9874050c2eeb34cba66p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_f6663f11bcf7d9874050c2eeb34cba66p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_f6663f11bcf7d9874050c2eeb34cba66p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_f6663f11bcf7d9874050c2eeb34cba66p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_f6663f11bcf7d9874050c2eeb34cba66p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_f6663f11bcf7d9874050c2eeb34cba66p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_f6663f11bcf7d9874050c2eeb34cba66p5@Myl12b
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_f6663f11bcf7d9874050c2eeb34cba66p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_f6663f11bcf7d9874050c2eeb34cba66p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_f6663f11bcf7d9874050c2eeb34cba66p@chrX:160840025..160840037, +
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_a8891c3c0756558d1ef807620560067ap1@ENSMUST00000150529
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_a8891c3c0756558d1ef807620560067ap1@ENSMUST00000150529
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_61ae0279b955b5714773204e03839c78p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_61ae0279b955b5714773204e03839c78p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_61ae0279b955b5714773204e03839c78p8@Vit
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_61ae0279b955b5714773204e03839c78p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_61ae0279b955b5714773204e03839c78p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_61ae0279b955b5714773204e03839c78p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_61ae0279b955b5714773204e03839c78p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_61ae0279b955b5714773204e03839c78p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_61ae0279b955b5714773204e03839c78p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_61ae0279b955b5714773204e03839c78p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_61ae0279b955b5714773204e03839c78p8@Vit
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_61ae0279b955b5714773204e03839c78p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_61ae0279b955b5714773204e03839c78p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_61ae0279b955b5714773204e03839c78p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_61ae0279b955b5714773204e03839c78p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_61ae0279b955b5714773204e03839c78p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_61ae0279b955b5714773204e03839c78p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_61ae0279b955b5714773204e03839c78p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_61ae0279b955b5714773204e03839c78p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_61ae0279b955b5714773204e03839c78p@chr10:96946110..96946113, +
1.26e-55FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_0d192e03141d25bb1e5af60fbb7d2d8fp@chr6:53359400..53359406, +
1.26e-55FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_0d192e03141d25bb1e5af60fbb7d2d8fp@chr6:53359400..53359406, +
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_f87af9963e5bcafb5affe925c78608eap5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_f87af9963e5bcafb5affe925c78608eap@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_f87af9963e5bcafb5affe925c78608eap@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_f87af9963e5bcafb5affe925c78608eap5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_f87af9963e5bcafb5affe925c78608eap4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_f87af9963e5bcafb5affe925c78608eap@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_f87af9963e5bcafb5affe925c78608eap@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_f87af9963e5bcafb5affe925c78608eap@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_f87af9963e5bcafb5affe925c78608eap@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_f87af9963e5bcafb5affe925c78608eap@chr10:67821185..67821217, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_f87af9963e5bcafb5affe925c78608eap@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_f87af9963e5bcafb5affe925c78608eap@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_f87af9963e5bcafb5affe925c78608eap@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_f87af9963e5bcafb5affe925c78608eap@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_f87af9963e5bcafb5affe925c78608eap@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_f87af9963e5bcafb5affe925c78608eap4@Il6st
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_12325f52df4c39873dbdaa5915c947b0p11@Svep1
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_12325f52df4c39873dbdaa5915c947b0p11@Svep1
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_c82b3bf0d06960d13a9ff51e88072891p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_c82b3bf0d06960d13a9ff51e88072891p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_f046a0ab772808dc451c58f3d9880583p5@Phlda3
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_f046a0ab772808dc451c58f3d9880583p5@Phlda3
5.51e-52FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_db94146ac04e1edfdeb75772de1151a7p@chr2:65009852..65009866, -
5.51e-52FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_db94146ac04e1edfdeb75772de1151a7p@chr2:65009852..65009866, -
1.18e-44FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chrX:160838683..160838694, +
1.18e-44FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr17:14813242..14813246, -
1.18e-44FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr17:14813242..14813246, -
1.18e-44FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_6a7cd2d917d7300a9a4ab9b995c15acdp10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chrX:160838683..160838694, +
1.18e-44FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_6a7cd2d917d7300a9a4ab9b995c15acdp@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_6a7cd2d917d7300a9a4ab9b995c15acdp10@Gpr39
1.66e-44FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_5ade0400a51e95ec22e8d534ef485173p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_5ade0400a51e95ec22e8d534ef485173p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_5ade0400a51e95ec22e8d534ef485173p9@Fgf10
1.66e-44FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_5ade0400a51e95ec22e8d534ef485173p9@Fgf10
2.33e-44FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_708dac618a6f0dfaf92c850686aacd4dp@chr17:75790300..75790304, +
2.33e-44FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_708dac618a6f0dfaf92c850686aacd4dp@chr17:75790300..75790304, +
3.27e-44FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_6da712fbf74624270a9f49037c04ec8cp9@Gpr39
3.27e-44FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_6da712fbf74624270a9f49037c04ec8cp9@Gpr39
4.58e-44FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_c3e07cf24b4518ad4e9f6c20a9041852p@chr17:14813991..14813999, +
4.58e-44FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_c3e07cf24b4518ad4e9f6c20a9041852p@chr17:14813991..14813999, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004237&oldid=415112"