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Coexpression cluster:C98

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Full id: C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole



Phase1 CAGE Peaks

Hg19::chr10:72360327..72360336,-p6@PRF1
Hg19::chr10:72362460..72362475,-p1@PRF1
Hg19::chr11:108094520..108094540,+p@chr11:108094520..108094540
+
Hg19::chr11:108094553..108094560,+p@chr11:108094553..108094560
+
Hg19::chr11:122709344..122709378,+p@chr11:122709344..122709378
+
Hg19::chr11:128498871..128498879,+p@chr11:128498871..128498879
+
Hg19::chr12:10460438..10460485,+p1@KLRD1
Hg19::chr12:10460489..10460500,+p3@KLRD1
Hg19::chr12:10460570..10460585,+p2@KLRD1
Hg19::chr12:10461953..10461958,+p4@KLRD1
Hg19::chr12:10476477..10476481,+p@chr12:10476477..10476481
+
Hg19::chr12:10542623..10542647,-p1@KLRK1
Hg19::chr12:10542654..10542666,-p3@KLRK1
Hg19::chr12:10561626..10561641,-p@chr12:10561626..10561641
-
Hg19::chr12:10562135..10562149,-p1@ENST00000539300
p1@ENST00000539370
Hg19::chr12:10563996..10564002,-p@chr12:10563996..10564002
-
Hg19::chr12:10564247..10564267,-p@chr12:10564247..10564267
-
Hg19::chr12:10705960..10705966,+p1@ENST00000544591
Hg19::chr12:10752214..10752231,-p1@ENST00000521068
Hg19::chr12:47759534..47759544,-p@chr12:47759534..47759544
-
Hg19::chr12:6884167..6884181,+p4@LAG3
Hg19::chr12:6884195..6884206,+p5@LAG3
Hg19::chr12:9144740..9144749,+p11@KLRG1
Hg19::chr12:9144787..9144796,+p10@KLRG1
Hg19::chr12:9760499..9760520,-p1@KLRB1
Hg19::chr12:9980007..9980012,+p5@KLRF1
Hg19::chr12:9980015..9980039,+p2@KLRF1
Hg19::chr12:9980051..9980062,+p4@KLRF1
Hg19::chr12:9980069..9980087,+p1@KLRF1
Hg19::chr12:9980113..9980133,+p3@KLRF1
Hg19::chr14:102290125..102290135,+p13@PPP2R5C
Hg19::chr14:25078866..25078900,-p1@GZMH
Hg19::chr14:25078915..25078944,-p2@GZMH
Hg19::chr14:25078961..25078977,-p3@GZMH
Hg19::chr14:52734401..52734446,+p1@PTGDR
Hg19::chr14:91866533..91866544,-p@chr14:91866533..91866544
-
Hg19::chr14:98172466..98172486,+p@chr14:98172466..98172486
+
Hg19::chr14:98172510..98172521,+p@chr14:98172510..98172521
+
Hg19::chr14:98680322..98680334,+p@chr14:98680322..98680334
+
Hg19::chr14:99753684..99753709,-p@chr14:99753684..99753709
-
Hg19::chr15:29211622..29211634,+p9@APBA2
Hg19::chr15:44968000..44968011,-p7@PATL2
Hg19::chr15:44969063..44969079,-p3@PATL2
Hg19::chr15:44969086..44969121,-p2@PATL2
Hg19::chr15:86236385..86236399,+p21@AKAP13
Hg19::chr16:2891972..2891987,-p1@PRSS30P
Hg19::chr16:2892006..2892017,-p2@PRSS30P
Hg19::chr16:405223..405242,-p@chr16:405223..405242
-
Hg19::chr16:405262..405285,-p@chr16:405262..405285
-
Hg19::chr16:53479662..53479672,+p13@RBL2
Hg19::chr16:53479673..53479710,+p3@RBL2
Hg19::chr16:53484007..53484046,+p7@RBL2
Hg19::chr16:57626673..57626679,-p@chr16:57626673..57626679
-
Hg19::chr16:88769979..88770008,-p2@RNF166
Hg19::chr16:88770052..88770065,-p4@RNF166
Hg19::chr16:89789248..89789270,+p8@ZNF276
Hg19::chr16:89789271..89789291,+p5@ZNF276
Hg19::chr17:33814824..33814834,-p7@SLFN12L
Hg19::chr17:33815324..33815342,-p6@SLFN12L
Hg19::chr17:34430980..34430984,+p3@CCL4
Hg19::chr17:34431082..34431115,+p4@CCL4
Hg19::chr17:34476414..34476434,-p@chr17:34476414..34476434
-
Hg19::chr17:37865861..37865878,+p@chr17:37865861..37865878
+
Hg19::chr17:61517622..61517633,-p@chr17:61517622..61517633
-
Hg19::chr17:75431450..75431461,-p@chr17:75431450..75431461
-
Hg19::chr17:78682519..78682561,+p@chr17:78682519..78682561
+
Hg19::chr17:80275399..80275416,-p3@CD7
Hg19::chr19:10628117..10628130,-p1@S1PR5
Hg19::chr19:10908560..10908583,+p@chr19:10908560..10908583
+
Hg19::chr19:30101122..30101134,+p@chr19:30101122..30101134
+
Hg19::chr19:4917016..4917055,-p2@AK097879
Hg19::chr19:51875274..51875286,-p@chr19:51875274..51875286
-
Hg19::chr19:51875861..51875872,-p2@NKG7
Hg19::chr19:51875894..51875975,-p1@NKG7
Hg19::chr19:544039..544065,+p1@GZMM
Hg19::chr1:117349021..117349041,-p@chr1:117349021..117349041
-
Hg19::chr1:145715572..145715599,-p1@CD160
Hg19::chr1:145715634..145715642,-p2@CD160
Hg19::chr1:157670658..157670667,-p4@FCRL3
Hg19::chr1:157670670..157670684,-p5@FCRL3
Hg19::chr1:159770292..159770315,+p1@FCRL6
Hg19::chr1:159772121..159772159,+p2@FCRL6
Hg19::chr1:202172827..202172845,+p5@LGR6
Hg19::chr1:202172848..202172894,+p2@LGR6
Hg19::chr1:26697182..26697187,-p5@ZNF683
Hg19::chr1:26697189..26697205,-p2@ZNF683
Hg19::chr1:26697243..26697258,-p1@ZNF683
Hg19::chr1:41771607..41771618,-p@chr1:41771607..41771618
-
Hg19::chr1:8986862..8986905,-p@chr1:8986862..8986905
-
Hg19::chr1:8986930..8986955,-p@chr1:8986930..8986955
-
Hg19::chr1:90075464..90075470,-p@chr1:90075464..90075470
-
Hg19::chr1:9777652..9777678,-p@chr1:9777652..9777678
-
Hg19::chr1:9777710..9777721,-p@chr1:9777710..9777721
-
Hg19::chr20:57757940..57757966,+p1@ZNF831
Hg19::chr21:47844888..47844896,+p@chr21:47844888..47844896
+
Hg19::chr22:23101972..23101984,-p@chr22:23101972..23101984
-
Hg19::chr22:23161491..23161502,+p2@IGLV3-9
Hg19::chr22:23163296..23163300,-p@chr22:23163296..23163300
-
Hg19::chr22:37627503..37627591,-p6@RAC2
Hg19::chr22:37627612..37627625,-p18@RAC2
Hg19::chr22:46677407..46677438,+p@chr22:46677407..46677438
+
Hg19::chr22:46677442..46677447,+p@chr22:46677442..46677447
+
Hg19::chr22:46685694..46685729,+p@chr22:46685694..46685729
+
Hg19::chr2:107103805..107103824,+p1@ENST00000303432
p1@ENST00000446559
Hg19::chr2:107103861..107103870,+p1@ENST00000417670
Hg19::chr2:182038499..182038509,+p@chr2:182038499..182038509
+
Hg19::chr2:37827039..37827047,+p1@ENST00000419425
Hg19::chr2:37827073..37827104,+p3@ENST00000419425
Hg19::chr2:38830433..38830444,-p10@HNRPLL
Hg19::chr2:43359692..43359706,-p@chr2:43359692..43359706
-
Hg19::chr2:8422694..8422702,-p@chr2:8422694..8422702
-
Hg19::chr2:85921998..85922016,+p8@GNLY
Hg19::chr2:85922031..85922057,+p5@GNLY
Hg19::chr2:87012395..87012400,-p@chr2:87012395..87012400
-
Hg19::chr2:87053149..87053161,-p@chr2:87053149..87053161
-
Hg19::chr2:87053183..87053198,-p@chr2:87053183..87053198
-
Hg19::chr2:87053245..87053263,-p@chr2:87053245..87053263
-
Hg19::chr2:87053274..87053287,-p@chr2:87053274..87053287
-
Hg19::chr2:87053288..87053295,-p@chr2:87053288..87053295
-
Hg19::chr2:87053338..87053349,-p@chr2:87053338..87053349
-
Hg19::chr2:98330258..98330297,+p@chr2:98330258..98330297
+
Hg19::chr2:99278536..99278548,-p@chr2:99278536..99278548
-
Hg19::chr2:99278552..99278568,-p@chr2:99278552..99278568
-
Hg19::chr2:99279928..99279942,-p2@MGAT4A
Hg19::chr2:99279946..99279957,-p4@MGAT4A
Hg19::chr2:99279996..99280007,-p6@MGAT4A
Hg19::chr2:99280024..99280037,-p3@MGAT4A
Hg19::chr3:15345817..15345834,-p@chr3:15345817..15345834
-
Hg19::chr3:15345839..15345879,-p@chr3:15345839..15345879
-
Hg19::chr3:15345887..15345911,-p@chr3:15345887..15345911
-
Hg19::chr3:188839075..188839104,+p5@TPRG1
Hg19::chr3:27754397..27754419,+p@chr3:27754397..27754419
+
Hg19::chr3:27763151..27763173,-p@chr3:27763151..27763173
-
Hg19::chr3:27763807..27763822,-p1@EOMES
Hg19::chr3:28333250..28333259,+p5@CMC1
Hg19::chr3:28333332..28333352,+p2@CMC1
Hg19::chr3:39273990..39274028,+p@chr3:39273990..39274028
+
Hg19::chr3:50378363..50378383,-p10@RASSF1
Hg19::chr3:50378388..50378410,-p5@RASSF1
Hg19::chr4:103536099..103536131,-p@chr4:103536099..103536131
-
Hg19::chr4:103551892..103551903,-p@chr4:103551892..103551903
-
Hg19::chr4:122104714..122104718,-p@chr4:122104714..122104718
-
Hg19::chr4:148973904..148973919,+p@chr4:148973904..148973919
+
Hg19::chr4:153022203..153022216,+p1@ENST00000499452
p1@uc003imp.1
Hg19::chr4:4271326..4271347,-p@chr4:4271326..4271347
-
Hg19::chr4:4271366..4271377,-p@chr4:4271366..4271377
-
Hg19::chr4:48116477..48116487,-p4@TXK
Hg19::chr4:48116540..48116569,-p2@TXK
Hg19::chr5:35780579..35780585,+p@chr5:35780579..35780585
+
Hg19::chr5:35822699..35822708,-p@chr5:35822699..35822708
-
Hg19::chr5:35856882..35856909,-p@chr5:35856882..35856909
-
Hg19::chr5:35857894..35857919,+p@chr5:35857894..35857919
+
Hg19::chr5:35859218..35859252,-p@chr5:35859218..35859252
-
Hg19::chr5:39203244..39203272,+p@chr5:39203244..39203272
+
Hg19::chr5:54320078..54320090,+p1@GZMK
Hg19::chr6:108053352..108053354,-p3@SCML4
Hg19::chr6:112081113..112081154,-p4@FYN
Hg19::chr6:112115074..112115094,-p3@FYN
Hg19::chr6:112115103..112115122,-p10@FYN
Hg19::chr6:112115138..112115155,-p6@FYN
Hg19::chr6:112115162..112115173,-p20@FYN
Hg19::chr6:128239704..128239722,-p4@THEMIS
Hg19::chr6:128239732..128239745,-p2@THEMIS
Hg19::chr6:128239749..128239760,-p6@THEMIS
Hg19::chr6:128299606..128299618,+p@chr6:128299606..128299618
+
Hg19::chr6:130536707..130536763,-p2@SAMD3
Hg19::chr6:35569582..35569593,-p@chr6:35569582..35569593
-
Hg19::chr6:35570546..35570560,-p@chr6:35570546..35570560
-
Hg19::chr7:142202124..142202131,-p@chr7:142202124..142202131
-
Hg19::chr7:142496418..142496422,+p@chr7:142496418..142496422
+
Hg19::chr7:150148709..150148722,+p@chr7:150148709..150148722
+
Hg19::chr7:3157659..3157673,-p@chr7:3157659..3157673
-
Hg19::chr7:36763796..36763808,-p5@AOAH
Hg19::chr7:36763824..36763825,-p10@AOAH
Hg19::chr7:36763827..36763849,-p3@AOAH
Hg19::chr7:38339870..38339884,-p1@uc003tgl.1
Hg19::chr7:38339890..38339930,-p1@TRGV10
Hg19::chr7:38339942..38339971,-p2@TRGV10
Hg19::chr7:38370096..38370108,-p1@X06776
Hg19::chr7:38370567..38370591,-p1@uc010kxj.1
Hg19::chr7:38370595..38370606,-p2@uc010kxj.1
Hg19::chr7:38394132..38394135,-p2@TRGV4
Hg19::chr8:1806877..1806888,+p4@ARHGEF10
Hg19::chr8:1806935..1806947,+p3@ARHGEF10
Hg19::chr9:130482517..130482528,+p2@TTC16
Hg19::chr9:130482537..130482559,+p1@TTC16
Hg19::chr9:130668851..130668877,-p@chr9:130668851..130668877
-
Hg19::chr9:136006379..136006394,-p20@RALGDS
Hg19::chr9:136006566..136006581,-p11@RALGDS
Hg19::chr9:98257510..98257517,-p@chr9:98257510..98257517
-
Hg19::chrX:153579541..153579552,-p90@FLNA


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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