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Coexpression cluster:C54

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Full id: C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature



Phase1 CAGE Peaks

Hg19::chr10:100204220..100204230,-p@chr10:100204220..100204230
-
Hg19::chr10:104338730..104338756,+p@chr10:104338730..104338756
+
Hg19::chr10:119014647..119014658,+p@chr10:119014647..119014658
+
Hg19::chr10:119014661..119014665,+p@chr10:119014661..119014665
+
Hg19::chr10:127738449..127738456,-p@chr10:127738449..127738456
-
Hg19::chr10:127738483..127738488,-p@chr10:127738483..127738488
-
Hg19::chr10:127738495..127738498,-p@chr10:127738495..127738498
-
Hg19::chr10:127738503..127738517,-p@chr10:127738503..127738517
-
Hg19::chr10:127738525..127738534,-p@chr10:127738525..127738534
-
Hg19::chr10:127738551..127738554,-p@chr10:127738551..127738554
-
Hg19::chr10:127738567..127738604,-p@chr10:127738567..127738604
-
Hg19::chr10:29844110..29844136,-p18@SVIL
Hg19::chr10:46048728..46048735,-p@chr10:46048728..46048735
-
Hg19::chr10:46048740..46048751,-p@chr10:46048740..46048751
-
Hg19::chr10:49860332..49860349,-p6@ARHGAP22
Hg19::chr10:49893243..49893306,+p3@WDFY4
Hg19::chr10:49893502..49893519,+p4@WDFY4
Hg19::chr10:49917757..49917760,+p5@WDFY4
Hg19::chr10:64399026..64399035,-p@chr10:64399026..64399035
-
Hg19::chr10:64564798..64564848,+p4@ADO
Hg19::chr10:64565761..64565780,-p2@ENST00000425290
Hg19::chr10:90973138..90973160,-p@chr10:90973138..90973160
-
Hg19::chr10:90973385..90973402,-p@chr10:90973385..90973402
-
Hg19::chr10:90973438..90973461,-p@chr10:90973438..90973461
-
Hg19::chr10:90973564..90973577,-p@chr10:90973564..90973577
-
Hg19::chr10:90973582..90973594,-p@chr10:90973582..90973594
-
Hg19::chr10:90973608..90973618,-p@chr10:90973608..90973618
-
Hg19::chr10:90973672..90973683,-p@chr10:90973672..90973683
-
Hg19::chr10:90973762..90973771,-p@chr10:90973762..90973771
-
Hg19::chr10:90974002..90974011,-p@chr10:90974002..90974011
-
Hg19::chr10:90974245..90974254,-p@chr10:90974245..90974254
-
Hg19::chr10:90974302..90974318,-p@chr10:90974302..90974318
-
Hg19::chr10:90974368..90974396,-p@chr10:90974368..90974396
-
Hg19::chr10:90974443..90974454,-p@chr10:90974443..90974454
-
Hg19::chr10:90974462..90974478,-p@chr10:90974462..90974478
-
Hg19::chr10:90974488..90974495,-p@chr10:90974488..90974495
-
Hg19::chr10:90974582..90974590,-p@chr10:90974582..90974590
-
Hg19::chr10:90974591..90974623,-p@chr10:90974591..90974623
-
Hg19::chr10:90974639..90974650,-p@chr10:90974639..90974650
-
Hg19::chr10:90974750..90974762,-p@chr10:90974750..90974762
-
Hg19::chr10:90975757..90975768,-p@chr10:90975757..90975768
-
Hg19::chr10:90983491..90983502,-p15@LIPA
Hg19::chr10:90983516..90983545,-p9@LIPA
Hg19::chr10:90983566..90983579,-p14@LIPA
Hg19::chr10:90984900..90984932,-p8@LIPA
Hg19::chr10:90984960..90985007,-p7@LIPA
Hg19::chr10:90986735..90986753,-p@chr10:90986735..90986753
-
Hg19::chr10:90986757..90986768,-p@chr10:90986757..90986768
-
Hg19::chr10:90987988..90988002,-p@chr10:90987988..90988002
-
Hg19::chr10:90988013..90988023,-p@chr10:90988013..90988023
-
Hg19::chr10:90988035..90988053,-p@chr10:90988035..90988053
-
Hg19::chr10:90988063..90988075,-p@chr10:90988063..90988075
-
Hg19::chr10:90988088..90988122,-p@chr10:90988088..90988122
-
Hg19::chr10:91005509..91005551,-p@chr10:91005509..91005551
-
Hg19::chr10:91007323..91007347,-p11@LIPA
Hg19::chr10:91007364..91007388,-p12@LIPA
Hg19::chr10:91008780..91008814,-p@chr10:91008780..91008814
-
Hg19::chr10:91011525..91011541,-p2@LIPA
Hg19::chr10:91011548..91011636,-p1@LIPA
Hg19::chr11:102734908..102734911,-p@chr11:102734908..102734911
-
Hg19::chr11:102742411..102742449,-p@chr11:102742411..102742449
-
Hg19::chr11:102742640..102742679,-p@chr11:102742640..102742679
-
Hg19::chr11:102745704..102745720,-p1@MMP12
Hg19::chr11:117057817..117057863,+p27@SIDT2
Hg19::chr11:1870362..1870366,-p@chr11:1870362..1870366
-
Hg19::chr11:1870376..1870388,-p@chr11:1870376..1870388
-
Hg19::chr11:1870461..1870472,+p@chr11:1870461..1870472
+
Hg19::chr11:1870494..1870502,+p@chr11:1870494..1870502
+
Hg19::chr11:62496376..62496420,+p5@TTC9C
Hg19::chr11:62496425..62496434,+p8@TTC9C
Hg19::chr11:7544914..7544928,+p@chr11:7544914..7544928
+
Hg19::chr11:7544941..7544949,+p@chr11:7544941..7544949
+
Hg19::chr11:96032868..96032879,-p@chr11:96032868..96032879
-
Hg19::chr11:96032916..96032925,-p@chr11:96032916..96032925
-
Hg19::chr12:12764947..12764986,+p2@CREBL2
Hg19::chr12:12764995..12765017,+p3@CREBL2
Hg19::chr12:133404969..133404985,-p11@GOLGA3
Hg19::chr12:15699302..15699354,+p3@PTPRO
Hg19::chr12:15699539..15699569,+p2@PTPRO
Hg19::chr12:15699573..15699617,+p6@PTPRO
Hg19::chr12:1725865..1725884,+p7@WNT5B
Hg19::chr12:51403047..51403061,-p5@SLC11A2
Hg19::chr12:8276495..8276523,+p4@CLEC4A
Hg19::chr12:8278143..8278154,+p@chr12:8278143..8278154
+
Hg19::chr13:50125637..50125647,-p@chr13:50125637..50125647
-
Hg19::chr13:52733249..52733254,+p@chr13:52733249..52733254
+
Hg19::chr14:106071504..106071518,-p1@ENST00000390540
Hg19::chr14:24099350..24099380,+p3@DHRS2
Hg19::chr14:55590616..55590617,+p33@LGALS3
Hg19::chr14:55590646..55590689,+p2@LGALS3
Hg19::chr14:61449076..61449109,+p12@SLC38A6
Hg19::chr14:61452664..61452679,+p@chr14:61452664..61452679
+
Hg19::chr14:61452692..61452701,+p@chr14:61452692..61452701
+
Hg19::chr14:76071818..76071827,+p14@FLVCR2
Hg19::chr14:76071847..76071857,+p8@FLVCR2
Hg19::chr14:90527075..90527088,+p@chr14:90527075..90527088
+
Hg19::chr14:90527557..90527602,+p@chr14:90527557..90527602
+
Hg19::chr14:90528333..90528366,+p1@KCNK13
Hg19::chr14:91019196..91019216,-p@chr14:91019196..91019216
-
Hg19::chr15:101529373..101529387,+p@chr15:101529373..101529387
+
Hg19::chr15:45454976..45454985,+p@chr15:45454976..45454985
+
Hg19::chr15:45879920..45879963,+p7@PLDN
Hg19::chr15:58401896..58401913,+p@chr15:58401896..58401913
+
Hg19::chr15:73978556..73978566,+p@chr15:73978556..73978566
+
Hg19::chr15:78598854..78598866,-p@chr15:78598854..78598866
-
Hg19::chr15:99943910..99943923,-p@chr15:99943910..99943923
-
Hg19::chr16:31141328..31141350,+p2@KAT8
Hg19::chr16:5070578..5070590,-p@chr16:5070578..5070590
-
Hg19::chr16:5070595..5070602,-p@chr16:5070595..5070602
-
Hg19::chr16:57397571..57397582,-p5@CU693343
Hg19::chr16:57397666..57397694,-p2@CU693343
Hg19::chr16:57397735..57397758,-p3@CU693343
Hg19::chr16:57397953..57397960,-p8@CU693343
Hg19::chr16:57398251..57398254,+p@chr16:57398251..57398254
+
Hg19::chr16:57398312..57398334,-p@chr16:57398312..57398334
-
Hg19::chr16:57398336..57398358,+p@chr16:57398336..57398358
+
Hg19::chr16:57398353..57398367,-p@chr16:57398353..57398367
-
Hg19::chr16:57398663..57398698,+p@chr16:57398663..57398698
+
Hg19::chr16:57398987..57399006,+p@chr16:57398987..57399006
+
Hg19::chr16:57399022..57399038,+p@chr16:57399022..57399038
+
Hg19::chr16:57399043..57399070,+p@chr16:57399043..57399070
+
Hg19::chr16:57399108..57399115,+p@chr16:57399108..57399115
+
Hg19::chr16:57447773..57447787,+p1@CCL17
Hg19::chr16:57449765..57449776,-p@chr16:57449765..57449776
-
Hg19::chr16:57449972..57449973,-p@chr16:57449972..57449973
-
Hg19::chr17:26961255..26961266,-p@chr17:26961255..26961266
-
Hg19::chr17:26970937..26970956,-p2@KIAA0100
Hg19::chr17:26970962..26970974,-p5@KIAA0100
Hg19::chr17:26971102..26971126,-p@chr17:26971102..26971126
-
Hg19::chr17:27441247..27441267,-p11@MYO18A
Hg19::chr17:27441287..27441300,-p16@MYO18A
Hg19::chr17:32683456..32683467,+p2@CCL13
Hg19::chr17:32683491..32683506,+p1@CCL13
Hg19::chr17:3704456..3704468,-p3@ITGAE
Hg19::chr17:4544965..4544979,-p1@ALOX15
Hg19::chr17:4545190..4545199,-p4@ALOX15
Hg19::chr17:46058415..46058422,+p@chr17:46058415..46058422
+
Hg19::chr17:46058427..46058445,+p@chr17:46058427..46058445
+
Hg19::chr17:46058446..46058447,+p@chr17:46058446..46058447
+
Hg19::chr17:46058452..46058468,+p@chr17:46058452..46058468
+
Hg19::chr17:5138079..5138093,-p2@SCIMP
Hg19::chr17:5138215..5138285,+p@chr17:5138215..5138285
+
Hg19::chr17:58499737..58499752,-p@chr17:58499737..58499752
-
Hg19::chr17:58499766..58499803,-p@chr17:58499766..58499803
-
Hg19::chr17:67125340..67125350,-p@chr17:67125340..67125350
-
Hg19::chr17:67125354..67125365,-p@chr17:67125354..67125365
-
Hg19::chr17:6982145..6982156,-p1@CU691636
Hg19::chr17:6982162..6982170,-p2@CU691636
Hg19::chr17:6983479..6983490,-p4@CLEC10A
Hg19::chr17:6983503..6983512,-p5@CLEC10A
Hg19::chr17:6983550..6983578,-p1@CLEC10A
Hg19::chr17:8171916..8171922,+p4@PFAS
Hg19::chr17:995355..995405,-p31@ABR
Hg19::chr17:995426..995430,-p54@ABR
Hg19::chr18:43620121..43620126,-p10@PSTPIP2
Hg19::chr18:43622921..43622930,-p@chr18:43622921..43622930
-
Hg19::chr18:59991691..59991708,+p@chr18:59991691..59991708
+
Hg19::chr18:60190653..60190680,+p4@ZCCHC2
Hg19::chr18:60190682..60190702,+p5@ZCCHC2
Hg19::chr18:67624099..67624112,-p8@CD226
Hg19::chr18:9866805..9866820,-p@chr18:9866805..9866820
-
Hg19::chr18:9914760..9914776,+p@chr18:9914760..9914776
+
Hg19::chr18:9914783..9914812,+p@chr18:9914783..9914812
+
Hg19::chr19:10246009..10246023,+p@chr19:10246009..10246023
+
Hg19::chr19:10246051..10246052,+p@chr19:10246051..10246052
+
Hg19::chr19:11018749..11018760,+p@chr19:11018749..11018760
+
Hg19::chr19:11018763..11018773,+p@chr19:11018763..11018773
+
Hg19::chr19:17842944..17842967,+p@chr19:17842944..17842967
+
Hg19::chr19:17842968..17843001,+p@chr19:17842968..17843001
+
Hg19::chr19:17843005..17843009,+p@chr19:17843005..17843009
+
Hg19::chr19:38778450..38778469,+p@chr19:38778450..38778469
+
Hg19::chr19:4723083..4723095,+p@chr19:4723083..4723095
+
Hg19::chr19:7606231..7606243,+p@chr19:7606231..7606243
+
Hg19::chr19:7606381..7606391,+p@chr19:7606381..7606391
+
Hg19::chr19:7764283..7764297,-p4@FCER2
Hg19::chr19:7795730..7795740,-p5@CLEC4G
Hg19::chr19:7806267..7806270,-p@chr19:7806267..7806270
-
Hg19::chr1:112162997..112163027,-p@chr1:112162997..112163027
-
Hg19::chr1:153744081..153744096,+p@chr1:153744081..153744096
+
Hg19::chr1:153744224..153744233,+p@chr1:153744224..153744233
+
Hg19::chr1:153744246..153744280,+p@chr1:153744246..153744280
+
Hg19::chr1:153744286..153744294,+p@chr1:153744286..153744294
+
Hg19::chr1:153744295..153744304,+p@chr1:153744295..153744304
+
Hg19::chr1:153746683..153746732,+p13@SLC27A3
Hg19::chr1:153747834..153747911,+p1@SLC27A3
Hg19::chr1:153747915..153747927,+p5@SLC27A3
Hg19::chr1:153747936..153747951,+p4@SLC27A3
Hg19::chr1:153750622..153750640,+p6@SLC27A3
Hg19::chr1:158224298..158224321,+p6@CD1A
Hg19::chr1:158224323..158224353,+p2@CD1A
Hg19::chr1:158224355..158224378,+p3@CD1A
Hg19::chr1:158259591..158259602,+p6@CD1C
Hg19::chr1:158259622..158259633,+p7@CD1C
Hg19::chr1:158259705..158259821,+p1@CD1C
Hg19::chr1:158260421..158260439,+p8@CD1C
Hg19::chr1:158260509..158260514,+p10@CD1C
Hg19::chr1:158260520..158260523,+p18@CD1C
Hg19::chr1:158301249..158301260,-p8@CD1B
Hg19::chr1:158301312..158301328,-p1@CD1B
Hg19::chr1:159272420..159272431,+p3@FCER1A
Hg19::chr1:159272441..159272452,+p5@FCER1A
Hg19::chr1:21416212..21416241,-p@chr1:21416212..21416241
-
Hg19::chr1:224398082..224398104,-p2@ENST00000453760
Hg19::chr1:224398121..224398143,-p1@ENST00000453760
Hg19::chr1:26870235..26870246,+p@chr1:26870235..26870246
+
Hg19::chr1:35496407..35496423,-p7@ZMYM6
Hg19::chr1:39468925..39468933,+p@chr1:39468925..39468933
+
Hg19::chr1:63112277..63112278,+p@chr1:63112277..63112278
+
Hg19::chr1:6418966..6419024,-p8@ACOT7
Hg19::chr1:75198605..75198621,-p6@CRYZ
Hg19::chr20:15229663..15229673,+p@chr20:15229663..15229673
+
Hg19::chr20:57571735..57571753,+p@chr20:57571735..57571753
+
Hg19::chr20:635110..635159,-p@chr20:635110..635159
-
Hg19::chr20:9966728..9966750,+p1@ENST00000449270
Hg19::chr20:9966757..9966774,+p1@ENST00000437504
Hg19::chr21:45110170..45110191,+p@chr21:45110170..45110191
+
Hg19::chr21:45111299..45111337,+p@chr21:45111299..45111337
+
Hg19::chr21:46351249..46351257,+p@chr21:46351249..46351257
+
Hg19::chr22:22153778..22153825,-p@chr22:22153778..22153825
-
Hg19::chr22:38609570..38609585,+p6@MAFF
Hg19::chr22:38609587..38609607,+p7@MAFF
Hg19::chr22:38609611..38609624,+p5@MAFF
Hg19::chr2:105372203..105372222,-p1@ENST00000424321
p1@uc002tci.1
Hg19::chr2:111877826..111877841,+p@chr2:111877826..111877841
+
Hg19::chr2:111877864..111877875,+p@chr2:111877864..111877875
+
Hg19::chr2:134024736..134024752,-p@chr2:134024736..134024752
-
Hg19::chr2:216878240..216878288,-p1@MREG
Hg19::chr2:218930415..218930444,-p1@CXCR2P1
Hg19::chr2:218933972..218933980,+p1@RUFY4
Hg19::chr2:218954217..218954224,+p@chr2:218954217..218954224
+
Hg19::chr2:239008780..239008802,+p6@ESPNL
Hg19::chr2:239008973..239009011,+p1@ESPNL
Hg19::chr2:239009020..239009045,+p3@ESPNL
Hg19::chr2:27545434..27545444,-p8@MPV17
Hg19::chr2:96987571..96987587,-p3@ENST00000421534
Hg19::chr2:96987608..96987641,-p1@ENST00000421534
Hg19::chr2:97012075..97012086,+p@chr2:97012075..97012086
+
Hg19::chr3:120500144..120500155,+p@chr3:120500144..120500155
+
Hg19::chr3:120500162..120500171,+p@chr3:120500162..120500171
+
Hg19::chr3:152588213..152588224,+p@chr3:152588213..152588224
+
Hg19::chr3:152588255..152588266,+p@chr3:152588255..152588266
+
Hg19::chr3:187492137..187492153,-p@chr3:187492137..187492153
-
Hg19::chr3:188001278..188001286,+p@chr3:188001278..188001286
+
Hg19::chr3:188001317..188001332,+p@chr3:188001317..188001332
+
Hg19::chr3:188302186..188302202,+p21@LPP
Hg19::chr3:189025969..189025974,+p@chr3:189025969..189025974
+
Hg19::chr3:195925842..195925889,-p2@ZDHHC19
Hg19::chr3:50648789..50648806,-p4@CISH
Hg19::chr3:50648941..50648958,+p7@MAPKAPK3
Hg19::chr3:52280220..52280225,+p12@PPM1M
Hg19::chr3:52280243..52280249,+p10@PPM1M
Hg19::chr3:58477616..58477641,+p2@KCTD6
Hg19::chr4:129491457..129491467,-p2@uc003igi.1
Hg19::chr4:129491478..129491496,-p1@uc003igi.1
Hg19::chr4:169632568..169632586,+p@chr4:169632568..169632586
+
Hg19::chr4:169633317..169633344,+p43@PALLD
Hg19::chr4:26324474..26324501,+p16@RBPJ
Hg19::chr4:26324517..26324526,+p48@RBPJ
Hg19::chr4:26887004..26887011,-p@chr4:26887004..26887011
-
Hg19::chr4:47916061..47916098,-p8@NFXL1
Hg19::chr4:47916504..47916515,-p6@NFXL1
Hg19::chr4:47916543..47916580,-p2@NFXL1
Hg19::chr4:78105380..78105389,+p@chr4:78105380..78105389
+
Hg19::chr4:78105456..78105472,+p@chr4:78105456..78105472
+
Hg19::chr4:78269658..78269665,+p@chr4:78269658..78269665
+
Hg19::chr4:78301661..78301667,+p@chr4:78301661..78301667
+
Hg19::chr4:91005462..91005483,+p@chr4:91005462..91005483
+
Hg19::chr5:132200275..132200284,-p2@GDF9
Hg19::chr5:137330866..137330879,-p@chr5:137330866..137330879
-
Hg19::chr5:137333629..137333641,-p@chr5:137333629..137333641
-
Hg19::chr5:14492668..14492692,+p19@TRIO
Hg19::chr5:176782864..176782872,-p@chr5:176782864..176782872
-
Hg19::chr5:41800428..41800437,-p@chr5:41800428..41800437
-
Hg19::chr5:52909608..52909635,+p@chr5:52909608..52909635
+
Hg19::chr5:71803177..71803255,-p1@ZNF366
Hg19::chr5:86707848..86707855,-p@chr5:86707848..86707855
-
Hg19::chr5:86707911..86707917,-p@chr5:86707911..86707917
-
Hg19::chr5:86708217..86708246,+p@chr5:86708217..86708246
+
Hg19::chr6:114291266..114291293,+p1@ENST00000436876
Hg19::chr6:114291386..114291399,+p1@ENST00000449620
Hg19::chr6:116691001..116691027,+p9@DSE
Hg19::chr6:116691028..116691039,+p21@DSE
Hg19::chr6:129927249..129927264,-p@chr6:129927249..129927264
-
Hg19::chr6:137105269..137105289,+p@chr6:137105269..137105289
+
Hg19::chr6:137482892..137482907,-p1@IL22RA2
Hg19::chr6:154521022..154521041,-p@chr6:154521022..154521041
-
Hg19::chr6:154521063..154521071,-p@chr6:154521063..154521071
-
Hg19::chr6:16762587..16762608,-p@chr6:16762587..16762608
-
Hg19::chr6:18445716..18445720,+p@chr6:18445716..18445720
+
Hg19::chr6:32156759..32156767,+p@chr6:32156759..32156767
+
Hg19::chr6:32498031..32498042,-p4@HLA-DRB5
Hg19::chr6:32557517..32557540,-p3@HLA-DRB1
p3@HLA-DRB5
Hg19::chr6:32557549..32557560,-p6@HLA-DRB1
p7@HLA-DRB5
Hg19::chr6:41130847..41130867,-p1@TREM2
Hg19::chr6:41130884..41130890,-p4@TREM2
Hg19::chr6:41130893..41130905,-p3@TREM2
Hg19::chr6:41130921..41130949,-p2@TREM2
Hg19::chr6:42145678..42145695,+p@chr6:42145678..42145695
+
Hg19::chr6:42145703..42145716,+p@chr6:42145703..42145716
+
Hg19::chr6:6704542..6704546,-p@chr6:6704542..6704546
-
Hg19::chr6:6801352..6801378,-p@chr6:6801352..6801378
-
Hg19::chr6:6851625..6851634,+p@chr6:6851625..6851634
+
Hg19::chr6:76311956..76311965,+p13@SENP6
Hg19::chr6:76311970..76311977,+p14@SENP6
Hg19::chr6:76311981..76311988,+p15@SENP6
Hg19::chr7:115790735..115790752,-p@chr7:115790735..115790752
-
Hg19::chr7:28614860..28614868,-p@chr7:28614860..28614868
-
Hg19::chr7:28614885..28614902,-p@chr7:28614885..28614902
-
Hg19::chr7:73657872..73657896,-p2@RFC2
Hg19::chr8:101348539..101348566,-p17@RNF19A
Hg19::chr8:17777952..17777982,-p@chr8:17777952..17777982
-
Hg19::chr8:20258288..20258300,+p@chr8:20258288..20258300
+
Hg19::chr8:20258347..20258360,+p@chr8:20258347..20258360
+
Hg19::chr8:67101044..67101050,+p@chr8:67101044..67101050
+
Hg19::chr8:97868092..97868102,+p@chr8:97868092..97868102
+
Hg19::chr8:97906247..97906259,+p@chr8:97906247..97906259
+
Hg19::chr9:124262213..124262234,-p3@GGTA1P
Hg19::chr9:124262252..124262263,-p8@GGTA1P
Hg19::chr9:124262289..124262296,-p9@GGTA1P
Hg19::chr9:131235669..131235680,+p@chr9:131235669..131235680
+
Hg19::chr9:131235697..131235702,+p@chr9:131235697..131235702
+
Hg19::chr9:135665202..135665215,-p@chr9:135665202..135665215
-
Hg19::chr9:35650229..35650243,-p1@AK093793
p1@AX748309
Hg19::chrX:43603033..43603042,+p11@MAOA
Hg19::chrX:43603059..43603080,+p4@MAOA
Hg19::chrX:43603088..43603100,+p8@MAOA
Hg19::chrX:43684298..43684322,+p@chrX:43684298..43684322
+
Hg19::chrX:80462246..80462271,+p@chrX:80462246..80462271
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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