Personal tools

UBERON:0001849

From FANTOM5_SSTAR

Revision as of 17:21, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:membranous labyrinth
Namespace:FANTOM
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0005641(otocyst epithelium)
part_of:UBERON:0001846(internal ear)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_ff6b9d38f6a159b0c39897a75ae91190p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_ff6b9d38f6a159b0c39897a75ae91190p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_ff6b9d38f6a159b0c39897a75ae91190p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_ff6b9d38f6a159b0c39897a75ae91190p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86745686..86745727, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001849&oldid=3277302"