Personal tools

NonredundantMotifs:48

From FANTOM5_SSTAR

Revision as of 10:21, 30 May 2013 by Autoedit (talk | contribs) (Autoedit moved page NonredundantMotifs:Motif48 to NonredundantMotifs:48 without leaving a redirect: NSchange)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant48
  • db :JASPAR
  • Id :MA0108.2
  • name :TBP
  • score :0.12305722137652626
  • External refs:
EntrezGene:6908
UniProt:6908

  • Internal refs:
EntrezGene:6908


Motif matrix
P0ACGT
16114515231
2164618309
33520235
43102374
53540530
626800121
73603206
8222244121
91554415733
105613515048
118314712831
128212712852
138211812861
146810713975
157710114071

Sub Motif Members