MCL coexpression mm9:2728
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr11:83993113..83993159,+ | p2@Acaca p2@LOC100503180 p2@LOC100503206 |
| Mm9::chr3:96531454..96531495,+ | p3@Rnf115 |
| Mm9::chrX:153930212..153930272,- | p4@Gm14680 p4@Sms |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0003989 | acetyl-CoA carboxylase activity | 0.00284884676491536 |
| GO:0004075 | biotin carboxylase activity | 0.00284884676491536 |
| GO:0009374 | biotin binding | 0.00284884676491536 |
| GO:0016421 | CoA carboxylase activity | 0.00299128910316113 |
| GO:0016885 | ligase activity, forming carbon-carbon bonds | 0.00299128910316113 |
| GO:0006633 | fatty acid biosynthetic process | 0.0194967950473895 |
| GO:0046394 | carboxylic acid biosynthetic process | 0.0194967950473895 |
| GO:0016053 | organic acid biosynthetic process | 0.0194967950473895 |
| GO:0019842 | vitamin binding | 0.0249274091930094 |
| GO:0030145 | manganese ion binding | 0.0275625924505561 |
| GO:0016879 | ligase activity, forming carbon-nitrogen bonds | 0.0284884676491536 |
| GO:0006631 | fatty acid metabolic process | 0.0284884676491536 |
| GO:0032787 | monocarboxylic acid metabolic process | 0.035007943899633 |
| GO:0008610 | lipid biosynthetic process | 0.0360175626707156 |
| GO:0016874 | ligase activity | 0.046008875253383 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.39e-12 | 23 |
| neuroblast (sensu Vertebrata) | 1.39e-12 | 23 |
| neuron | 4.15e-07 | 33 |
| neuronal stem cell | 4.15e-07 | 33 |
| neuroblast | 4.15e-07 | 33 |
| electrically signaling cell | 4.15e-07 | 33 |
| Ontology term | p-value | n |
|---|---|---|
| ecto-epithelium | 2.00e-15 | 73 |
| neurectoderm | 5.24e-15 | 64 |
| neural plate | 5.24e-15 | 64 |
| presumptive neural plate | 5.24e-15 | 64 |
| regional part of nervous system | 1.20e-14 | 54 |
| gray matter | 2.67e-14 | 34 |
| neural tube | 7.21e-14 | 52 |
| neural rod | 7.21e-14 | 52 |
| future spinal cord | 7.21e-14 | 52 |
| neural keel | 7.21e-14 | 52 |
| pre-chordal neural plate | 1.37e-13 | 49 |
| ectoderm-derived structure | 7.60e-12 | 95 |
| ectoderm | 7.60e-12 | 95 |
| presumptive ectoderm | 7.60e-12 | 95 |
| anterior neural tube | 1.89e-11 | 40 |
| brain grey matter | 2.03e-11 | 29 |
| regional part of telencephalon | 2.03e-11 | 29 |
| telencephalon | 2.03e-11 | 29 |
| brain | 2.38e-11 | 47 |
| future brain | 2.38e-11 | 47 |
| regional part of forebrain | 5.56e-11 | 39 |
| forebrain | 5.56e-11 | 39 |
| future forebrain | 5.56e-11 | 39 |
| regional part of brain | 6.33e-11 | 46 |
| central nervous system | 1.02e-10 | 73 |
| nervous system | 4.06e-10 | 75 |
| cerebral cortex | 1.36e-08 | 21 |
| cerebral hemisphere | 1.36e-08 | 21 |
| pallium | 1.36e-08 | 21 |
| anterior region of body | 2.08e-07 | 43 |
| structure with developmental contribution from neural crest | 3.26e-07 | 92 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 1.87396 |
| MA0004.1 | 0.801718 |
| MA0006.1 | 0.60285 |
| MA0007.1 | 0.784593 |
| MA0009.1 | 1.27673 |
| MA0014.1 | 1.33691 |
| MA0017.1 | 0.635031 |
| MA0019.1 | 1.08369 |
| MA0024.1 | 1.23079 |
| MA0025.1 | 1.51835 |
| MA0027.1 | 2.9431 |
| MA0028.1 | 0.61552 |
| MA0029.1 | 1.20789 |
| MA0030.1 | 1.21482 |
| MA0031.1 | 1.17722 |
| MA0038.1 | 0.963265 |
| MA0040.1 | 1.28983 |
| MA0041.1 | 0.714279 |
| MA0042.1 | 0.69885 |
| MA0043.1 | 1.3775 |
| MA0046.1 | 1.31428 |
| MA0048.1 | 0.353763 |
| MA0050.1 | 0.845669 |
| MA0051.1 | 0.973068 |
| MA0052.1 | 1.29825 |
| MA0055.1 | 0.190475 |
| MA0056.1 | 0 |
| MA0057.1 | 0.337566 |
| MA0058.1 | 0.690848 |
| MA0059.1 | 0.705317 |
| MA0060.1 | 1.25521 |
| MA0061.1 | 0.5406 |
| MA0063.1 | 0 |
| MA0066.1 | 0.951196 |
| MA0067.1 | 1.63197 |
| MA0068.1 | 0.343188 |
| MA0069.1 | 1.29861 |
| MA0070.1 | 1.28847 |
| MA0071.1 | 0.844726 |
| MA0072.1 | 1.2796 |
| MA0073.1 | 0.0430758 |
| MA0074.1 | 0.911576 |
| MA0076.1 | 1.58243 |
| MA0077.1 | 1.2569 |
| MA0078.1 | 1.0091 |
| MA0081.1 | 0.732313 |
| MA0083.1 | 1.37668 |
| MA0084.1 | 1.96428 |
| MA0087.1 | 1.33189 |
| MA0088.1 | 0.27999 |
| MA0089.1 | 0 |
| MA0090.1 | 0.762482 |
| MA0091.1 | 0.816659 |
| MA0092.1 | 0.762845 |
| MA0093.1 | 0.62555 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.89873 |
| MA0101.1 | 0.71579 |
| MA0103.1 | 0.647985 |
| MA0105.1 | 1.84392 |
| MA0106.1 | 1.01755 |
| MA0107.1 | 0.640607 |
| MA0108.2 | 1.10817 |
| MA0109.1 | 0 |
| MA0111.1 | 0.778753 |
| MA0113.1 | 0.986839 |
| MA0114.1 | 0.537669 |
| MA0115.1 | 1.38041 |
| MA0116.1 | 1.46662 |
| MA0117.1 | 1.34691 |
| MA0119.1 | 0.716476 |
| MA0122.1 | 1.36752 |
| MA0124.1 | 1.57762 |
| MA0125.1 | 1.5017 |
| MA0130.1 | 0 |
| MA0131.1 | 1.07881 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.4152 |
| MA0136.1 | 0.933582 |
| MA0139.1 | 0.462282 |
| MA0140.1 | 0.898603 |
| MA0141.1 | 0.671467 |
| MA0142.1 | 1.16183 |
| MA0143.1 | 1.00467 |
| MA0144.1 | 0.541532 |
| MA0145.1 | 0.292366 |
| MA0146.1 | 0.46063 |
| MA0147.1 | 0.556853 |
| MA0148.1 | 0.820161 |
| MA0149.1 | 0.722227 |
| MA0062.2 | 1.06145 |
| MA0035.2 | 0.903829 |
| MA0039.2 | 0.40695 |
| MA0138.2 | 1.07027 |
| MA0002.2 | 0.466067 |
| MA0137.2 | 0.668025 |
| MA0104.2 | 1.21648 |
| MA0047.2 | 0.962424 |
| MA0112.2 | 0.794478 |
| MA0065.2 | 0.292912 |
| MA0150.1 | 0.784464 |
| MA0151.1 | 0 |
| MA0152.1 | 0.962542 |
| MA0153.1 | 1.43238 |
| MA0154.1 | 0.35067 |
| MA0155.1 | 1.52001 |
| MA0156.1 | 1.58027 |
| MA0157.1 | 1.12772 |
| MA0158.1 | 0 |
| MA0159.1 | 0.569393 |
| MA0160.1 | 0.823568 |
| MA0161.1 | 0 |
| MA0162.1 | 0.499274 |
| MA0163.1 | 0.157796 |
| MA0164.1 | 0.933981 |
| MA0080.2 | 0.64167 |
| MA0018.2 | 0.944669 |
| MA0099.2 | 1.06348 |
| MA0079.2 | 0.166764 |
| MA0102.2 | 2.01714 |
| MA0258.1 | 0.520639 |
| MA0259.1 | 1.34197 |
| MA0442.1 | 0 |
