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MCL coexpression mm9:2526

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127103729..127103802,-p1@Nab2
Mm9::chr10:33926983..33927006,-p2@Dse
Mm9::chr10:33927007..33927071,-p1@Dse


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0047757chondroitin-glucuronate 5-epimerase activity0.00865611132416589
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives0.0138471222878844
GO:0014037Schwann cell differentiation0.0138471222878844
GO:0045682regulation of epidermis development0.0138471222878844
GO:0001958endochondral ossification0.0138471222878844
GO:0016854racemase and epimerase activity0.017307005837869
GO:0007422peripheral nervous system development0.0250834680669186
GO:0042552myelination0.0250834680669186
GO:0007272ensheathment of neurons0.0250834680669186
GO:0008366axon ensheathment0.0250834680669186
GO:0001508regulation of action potential0.0272701288295061
GO:0010001glial cell differentiation0.0272701288295061
GO:0042063gliogenesis0.0272701288295061
GO:0001503ossification0.0493937890147435
GO:0031214biomineral formation0.0493937890147435
GO:0008544epidermis development0.0493937890147435
GO:0007398ectoderm development0.0493937890147435
GO:0046849bone remodeling0.0493937890147435



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
thoracic cavity element1.73e-0717
thoracic segment organ1.73e-0717
thoracic cavity1.73e-0717
thoracic segment of trunk1.73e-0717
respiratory primordium1.73e-0717
endoderm of foregut1.73e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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