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MCL coexpression mm9:671

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Phase1 CAGE Peaks

 Short description
Mm9::chr14:122864041..122864099,-p@chr14:122864041..122864099
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Mm9::chr14:122864676..122864708,-p1@Zic5
Mm9::chr14:122873661..122873686,+p@chr14:122873661..122873686
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Mm9::chr14:122873694..122873710,+p@chr14:122873694..122873710
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Mm9::chr14:122879279..122879285,+p@chr14:122879279..122879285
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Mm9::chr9:91259711..91259725,-p@chr9:91259711..91259725
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Mm9::chr9:91260248..91260259,-p4@Zic1
Mm9::chr9:91262990..91263011,-p@chr9:91262990..91263011
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Mm9::chr9:91263173..91263220,+p2@Zic4
Mm9::chr9:91273474..91273484,+p11@Zic4
Mm9::chr9:91275527..91275544,+p@chr9:91275527..91275544
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0007417central nervous system development0.000483665690904929
GO:0001843neural tube closure0.000498947244351965
GO:0014020primary neural tube formation0.000498947244351965
GO:0001841neural tube formation0.000498947244351965
GO:0001839neural plate morphogenesis0.000498947244351965
GO:0001838embryonic epithelial tube formation0.000498947244351965
GO:0001840neural plate development0.000498947244351965
GO:0021915neural tube development0.000568641857073429
GO:0016331morphogenesis of embryonic epithelium0.000636282393872113
GO:0003677DNA binding0.000636282393872113
GO:0007399nervous system development0.000835223444455235
GO:0002009morphogenesis of an epithelium0.00136167516678533
GO:0035239tube morphogenesis0.00181898416272182
GO:0003676nucleic acid binding0.00213504303258981
GO:0007420brain development0.00243345122482529
GO:0048598embryonic morphogenesis0.00256023272294392
GO:0035295tube development0.00256023272294392
GO:0016337cell-cell adhesion0.0025884509832289
GO:0043009chordate embryonic development0.00269954463698739
GO:0009792embryonic development ending in birth or egg hatching0.00269954463698739
GO:0005634nucleus0.00625387709903602
GO:0008589regulation of smoothened signaling pathway0.00703697243384536
GO:0048731system development0.00703697243384536
GO:0048869cellular developmental process0.00703697243384536
GO:0030154cell differentiation0.00703697243384536
GO:0009790embryonic development0.00815239420749265
GO:0008270zinc ion binding0.0084646283988294
GO:0048856anatomical structure development0.00910520032603384
GO:0007275multicellular organismal development0.0116707777989934
GO:0022610biological adhesion0.0116707777989934
GO:0007155cell adhesion0.0116707777989934
GO:0007224smoothened signaling pathway0.0116707777989934
GO:0048066pigmentation during development0.0117203371206961
GO:0046914transition metal ion binding0.0125989430938281
GO:0032502developmental process0.0221024338513604
GO:0043231intracellular membrane-bound organelle0.0221024338513604
GO:0043227membrane-bound organelle0.0221024338513604
GO:0043169cation binding0.0288932550287507
GO:0009653anatomical structure morphogenesis0.0318776641924248
GO:0030900forebrain development0.0319765146532927
GO:0043229intracellular organelle0.0319765146532927
GO:0043226organelle0.0319765146532927
GO:0046872metal ion binding0.0322470960645324
GO:0043167ion binding0.0334005799442731
GO:0048513organ development0.0386898252973023
GO:0032501multicellular organismal process0.045169113728162



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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