MCL coexpression mm9:264
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0007178 | transmembrane receptor protein serine/threonine kinase signaling pathway | 0.0276058484853454 |
| GO:0007527 | adult somatic muscle development | 0.0276058484853454 |
| GO:0030036 | actin cytoskeleton organization and biogenesis | 0.0276058484853454 |
| GO:0030029 | actin filament-based process | 0.0276058484853454 |
| GO:0007525 | somatic muscle development | 0.0276058484853454 |
| GO:0007184 | SMAD protein nuclear translocation | 0.0306698039093664 |
| GO:0004499 | flavin-containing monooxygenase activity | 0.0328569034321639 |
| GO:0003779 | actin binding | 0.0358052730957127 |
| GO:0007167 | enzyme linked receptor protein signaling pathway | 0.0367876359540371 |
| GO:0051018 | protein kinase A binding | 0.0367876359540371 |
| GO:0007182 | common-partner SMAD protein phosphorylation | 0.0376195958943488 |
| GO:0050661 | NADP binding | 0.0393980510213329 |
| GO:0008092 | cytoskeletal protein binding | 0.0393980510213329 |
| GO:0016010 | dystrophin-associated glycoprotein complex | 0.0393980510213329 |
| GO:0031594 | neuromuscular junction | 0.039831442055262 |
| GO:0000060 | protein import into nucleus, translocation | 0.0404043651360832 |
| GO:0051016 | barbed-end actin filament capping | 0.0404043651360832 |
| GO:0030835 | negative regulation of actin filament depolymerization | 0.0404043651360832 |
| GO:0051693 | actin filament capping | 0.0404043651360832 |
| GO:0005624 | membrane fraction | 0.0404043651360832 |
| GO:0007010 | cytoskeleton organization and biogenesis | 0.0404043651360832 |
| GO:0030834 | regulation of actin filament depolymerization | 0.0404043651360832 |
| GO:0030042 | actin filament depolymerization | 0.0404043651360832 |
| GO:0007165 | signal transduction | 0.0404043651360832 |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen | 0.0404043651360832 |
| GO:0031227 | intrinsic to endoplasmic reticulum membrane | 0.0406118255343949 |
| GO:0000267 | cell fraction | 0.0421358455079084 |
| GO:0005605 | basal lamina | 0.0421358455079084 |
| GO:0007154 | cell communication | 0.0421358455079084 |
| GO:0008064 | regulation of actin polymerization and/or depolymerization | 0.0421358455079084 |
| GO:0051261 | protein depolymerization | 0.0421358455079084 |
| GO:0032535 | regulation of cellular component size | 0.0421358455079084 |
| GO:0032956 | regulation of actin cytoskeleton organization and biogenesis | 0.0421358455079084 |
| GO:0030832 | regulation of actin filament length | 0.0421358455079084 |
| GO:0051129 | negative regulation of cellular component organization and biogenesis | 0.0421358455079084 |
| GO:0051493 | regulation of cytoskeleton organization and biogenesis | 0.0421358455079084 |
| GO:0033043 | regulation of organelle organization and biogenesis | 0.0421358455079084 |
| GO:0008154 | actin polymerization and/or depolymerization | 0.0469985389384137 |
| GO:0007015 | actin filament organization | 0.0469985389384137 |
Relative expression of the co-expression cluster over median <br>Analyst:
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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
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