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MCL coexpression mm9:76

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:52410401..52410408,+p6@Slc35f1
Mm9::chr10:83903430..83903450,-p3@Nuak1
Mm9::chr11:110340662..110340679,+p4@Map2k6
Mm9::chr11:110340687..110340700,+p5@Map2k6
Mm9::chr11:113480632..113480660,+p1@Sstr2
Mm9::chr11:69843632..69843643,+p28@Dlg4
Mm9::chr11:70040791..70040799,-p@chr11:70040791..70040799
-
Mm9::chr11:98182595..98182598,-p@chr11:98182595..98182598
-
Mm9::chr11:98187374..98187396,-p@chr11:98187374..98187396
-
Mm9::chr11:98187500..98187512,-p@chr11:98187500..98187512
-
Mm9::chr11:98187516..98187525,-p@chr11:98187516..98187525
-
Mm9::chr11:98187616..98187626,+p@chr11:98187616..98187626
+
Mm9::chr11:98187765..98187774,-p@chr11:98187765..98187774
-
Mm9::chr11:98188005..98188016,-p@chr11:98188005..98188016
-
Mm9::chr11:98189657..98189671,-p@chr11:98189657..98189671
-
Mm9::chr11:98190918..98190951,-p1@Neurod2
Mm9::chr11:98233288..98233299,+p@chr11:98233288..98233299
+
Mm9::chr12:28025601..28025611,-p@chr12:28025601..28025611
-
Mm9::chr12:50478644..50478659,+p@chr12:50478644..50478659
+
Mm9::chr12:50478755..50478772,+p@chr12:50478755..50478772
+
Mm9::chr12:50478808..50478838,+p@chr12:50478808..50478838
+
Mm9::chr12:50482811..50482817,-p@chr12:50482811..50482817
-
Mm9::chr12:50482961..50482982,+p@chr12:50482961..50482982
+
Mm9::chr12:50483044..50483065,+p@chr12:50483044..50483065
+
Mm9::chr12:50483639..50483654,+p1@Foxg1
Mm9::chr12:50483663..50483678,+p3@Foxg1
Mm9::chr12:50484904..50484950,+p@chr12:50484904..50484950
+
Mm9::chr12:50485112..50485144,+p@chr12:50485112..50485144
+
Mm9::chr12:50485245..50485269,+p@chr12:50485245..50485269
+
Mm9::chr12:50485274..50485303,+p@chr12:50485274..50485303
+
Mm9::chr12:50485343..50485352,+p@chr12:50485343..50485352
+
Mm9::chr12:50485353..50485385,+p@chr12:50485353..50485385
+
Mm9::chr12:50485497..50485510,+p@chr12:50485497..50485510
+
Mm9::chr12:50485547..50485567,+p@chr12:50485547..50485567
+
Mm9::chr12:50485922..50485933,+p11@Foxg1
Mm9::chr12:50485948..50485959,+p7@Foxg1
Mm9::chr12:50485973..50486015,+p2@Foxg1
Mm9::chr12:50486431..50486450,+p@chr12:50486431..50486450
+
Mm9::chr12:50486639..50486645,+p@chr12:50486639..50486645
+
Mm9::chr12:51050188..51050205,+p@chr12:51050188..51050205
+
Mm9::chr12:71214719..71214755,-p@chr12:71214719..71214755
-
Mm9::chr13:29045252..29045271,-p5@Sox4
Mm9::chr13:29045274..29045293,-p6@Sox4
Mm9::chr13:29045296..29045307,-p8@Sox4
Mm9::chr13:29045308..29045318,-p10@Sox4
Mm9::chr13:29045321..29045337,-p2@Sox4
Mm9::chr13:77186886..77186936,-p3@Ankrd32
Mm9::chr13:83854934..83854950,+p@chr13:83854934..83854950
+
Mm9::chr13:83878479..83878492,+p1@ENSMUST00000052354
Mm9::chr14:13175827..13175832,-p@chr14:13175827..13175832
-
Mm9::chr14:13176244..13176263,-p@chr14:13176244..13176263
-
Mm9::chr14:13178147..13178185,-p1@Fezf2
Mm9::chr14:13178294..13178303,-p7@Fezf2
Mm9::chr14:13178323..13178347,-p3@Fezf2
Mm9::chr14:13178361..13178386,-p2@Fezf2
Mm9::chr14:22319505..22319521,-p@chr14:22319505..22319521
-
Mm9::chr15:103344762..103344783,+p@chr15:103344762..103344783
+
Mm9::chr15:30103246..30103251,-p@chr15:30103246..30103251
-
Mm9::chr15:43615527..43615530,-p@chr15:43615527..43615530
-
Mm9::chr15:44578120..44578143,-p@chr15:44578120..44578143
-
Mm9::chr15:66663187..66663230,-p9@Sla
Mm9::chr15:83602482..83602487,+p@chr15:83602482..83602487
+
Mm9::chr15:83610405..83610418,+p3@Mpped1
Mm9::chr15:83610429..83610463,+p2@Mpped1
Mm9::chr15:83610464..83610516,+p1@Mpped1
Mm9::chr15:83614756..83614778,+p7@Mpped1
Mm9::chr15:85408549..85408562,-p8@Wnt7b
Mm9::chr15:85408566..85408584,-p6@Wnt7b
Mm9::chr18:65048385..65048406,-p@chr18:65048385..65048406
-
Mm9::chr18:65048430..65048437,-p@chr18:65048430..65048437
-
Mm9::chr18:67020112..67020139,-p1@Mc4r
Mm9::chr18:67020151..67020162,-p2@Mc4r
Mm9::chr18:69753108..69753139,+p8@Tcf4
Mm9::chr18:69753145..69753159,+p14@Tcf4
Mm9::chr18:69753168..69753186,+p12@Tcf4
Mm9::chr18:69753200..69753211,+p@chr18:69753200..69753211
+
Mm9::chr18:69753237..69753261,+p@chr18:69753237..69753261
+
Mm9::chr18:69753278..69753292,+p@chr18:69753278..69753292
+
Mm9::chr1:173959095..173959106,-p@chr1:173959095..173959106
-
Mm9::chr1:178927083..178927100,+p@chr1:178927083..178927100
+
Mm9::chr1:179372543..179372557,+p9@Zfp238
Mm9::chr1:179372625..179372654,+p4@Zfp238
Mm9::chr1:179372666..179372678,+p11@Zfp238
Mm9::chr1:179374820..179374831,+p3@Zfp238
Mm9::chr1:179374862..179374873,+p6@Zfp238
Mm9::chr1:179375791..179375803,+p10@Zfp238
Mm9::chr1:179377246..179377266,+p@chr1:179377246..179377266
+
Mm9::chr1:179377320..179377331,+p@chr1:179377320..179377331
+
Mm9::chr1:179377595..179377604,+p@chr1:179377595..179377604
+
Mm9::chr1:41800521..41800543,+p@chr1:41800521..41800543
+
Mm9::chr1:41800574..41800586,+p@chr1:41800574..41800586
+
Mm9::chr1:42708169..42708173,-p@chr1:42708169..42708173
-
Mm9::chr1:42752654..42752665,+p5@Pou3f3
Mm9::chr1:56853013..56853024,-p@chr1:56853013..56853024
-
Mm9::chr1:56928204..56928208,-p@chr1:56928204..56928208
-
Mm9::chr1:56928531..56928535,-p@chr1:56928531..56928535
-
Mm9::chr1:56955934..56955944,-p@chr1:56955934..56955944
-
Mm9::chr1:57026671..57026694,-p@chr1:57026671..57026694
-
Mm9::chr1:57028111..57028122,-p9@Satb2
Mm9::chr1:57028125..57028149,-p2@Satb2
Mm9::chr1:57028157..57028173,-p3@Satb2
Mm9::chr1:57028182..57028191,-p11@Satb2
Mm9::chr1:57028295..57028349,+p1@9130024F11Rik
Mm9::chr1:57028594..57028604,-p10@Satb2
Mm9::chr1:57028606..57028625,-p4@Satb2
Mm9::chr1:57028877..57028888,+p@chr1:57028877..57028888
+
Mm9::chr1:57029024..57029050,+p@chr1:57029024..57029050
+
Mm9::chr1:57029399..57029433,+p@chr1:57029399..57029433
+
Mm9::chr1:57030876..57030880,+p@chr1:57030876..57030880
+
Mm9::chr2:151906844..151906873,+p3@Scrt2
Mm9::chr2:61642558..61642595,+p3@Tbr1
Mm9::chr2:61642631..61642684,+p1@Tbr1
Mm9::chr2:61642695..61642702,+p5@Tbr1
Mm9::chr2:61642743..61642758,+p2@Tbr1
Mm9::chr2:61642814..61642823,+p@chr2:61642814..61642823
+
Mm9::chr2:61643033..61643053,+p@chr2:61643033..61643053
+
Mm9::chr2:61643081..61643095,+p@chr2:61643081..61643095
+
Mm9::chr2:61643097..61643110,+p@chr2:61643097..61643110
+
Mm9::chr2:61650563..61650574,+p@chr2:61650563..61650574
+
Mm9::chr2:61651001..61651017,+p@chr2:61651001..61651017
+
Mm9::chr2:6792577..6792584,+p@chr2:6792577..6792584
+
Mm9::chr2:6806151..6806167,-p28@Celf2
Mm9::chr2:6806188..6806236,-p19@Celf2
Mm9::chr2:6806268..6806283,-p21@Celf2
Mm9::chr2:6806301..6806314,-p22@Celf2
Mm9::chr2:75086522..75086539,+p@chr2:75086522..75086539
+
Mm9::chr3:17954233..17954249,+p1@Bhlhe22
Mm9::chr3:17954392..17954407,+p2@Bhlhe22
Mm9::chr3:84108569..84108582,-p22@Trim2
Mm9::chr3:84108600..84108614,-p13@Trim2
Mm9::chr3:84108655..84108675,-p12@Trim2
Mm9::chr4:102997512..102997558,+p@chr4:102997512..102997558
+
Mm9::chr4:22413708..22413719,-p@chr4:22413708..22413719
-
Mm9::chr4:22413749..22413760,-p@chr4:22413749..22413760
-
Mm9::chr4:82138721..82138755,-p@chr4:82138721..82138755
-
Mm9::chr4:82144326..82144337,-p@chr4:82144326..82144337
-
Mm9::chr4:82145196..82145229,-p7@Nfib
Mm9::chr4:82145232..82145259,-p9@Nfib
Mm9::chr4:82155488..82155496,+p@chr4:82155488..82155496
+
Mm9::chr4:82879069..82879081,-p8@Ttc39b
Mm9::chr5:90312346..90312368,-p2@Adamts3
Mm9::chr6:144152590..144152602,-p22@Sox5
Mm9::chr6:144152648..144152680,-p5@Sox5
Mm9::chr6:144152701..144152714,-p24@Sox5
Mm9::chr6:144157869..144157876,-p26@Sox5
Mm9::chr6:144157880..144157889,-p25@Sox5
Mm9::chr6:144157893..144157905,-p14@Sox5
Mm9::chr6:144157924..144157955,-p2@Sox5
Mm9::chr6:144157960..144157967,-p20@Sox5
Mm9::chr6:144157968..144157989,-p7@Sox5
Mm9::chr6:144157991..144158007,-p9@Sox5
Mm9::chr6:144158153..144158167,-p19@Sox5
Mm9::chr6:144158183..144158210,-p11@Sox5
Mm9::chr6:144158267..144158282,-p16@Sox5
Mm9::chr6:55628519..55628533,-p@chr6:55628519..55628533
-
Mm9::chr6:55628542..55628563,-p@chr6:55628542..55628563
-
Mm9::chr6:55629052..55629066,-p@chr6:55629052..55629066
-
Mm9::chr6:55629608..55629628,-p@chr6:55629608..55629628
-
Mm9::chr6:55631042..55631102,-p1@Neurod6
Mm9::chr6:55631181..55631195,+p@chr6:55631181..55631195
+
Mm9::chr6:55631202..55631233,+p@chr6:55631202..55631233
+
Mm9::chr6:55631251..55631265,-p2@Neurod6
Mm9::chr6:55631282..55631299,+p@chr6:55631282..55631299
+
Mm9::chr6:55631324..55631335,-p3@Neurod6
Mm9::chr7:86531829..86531867,-p2@Rlbp1
Mm9::chr7:86680883..86680947,+p@chr7:86680883..86680947
+
Mm9::chr8:71658592..71658596,-p@chr8:71658592..71658596
-
Mm9::chr8:71708076..71708139,-p1@ENSMUST00000172413
p1@uc009lxb.1
Mm9::chr8:8621291..8621320,-p@chr8:8621291..8621320
-
Mm9::chr9:107407918..107407940,+p5@Cacna2d2
Mm9::chr9:118394263..118394288,+p@chr9:118394263..118394288
+
Mm9::chr9:120954001..120954018,-p6@Ulk4
Mm9::chr9:58046928..58046939,-p@chr9:58046928..58046939
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0065007biological regulation6.92642685468837e-08
GO:0006355regulation of transcription, DNA-dependent9.84396779962737e-08
GO:0006351transcription, DNA-dependent9.84396779962737e-08
GO:0032774RNA biosynthetic process9.84396779962737e-08
GO:0003677DNA binding9.84396779962737e-08
GO:0019222regulation of metabolic process9.84396779962737e-08
GO:0045449regulation of transcription9.84396779962737e-08
GO:0050789regulation of biological process9.84396779962737e-08
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process1.1686848142673e-07
GO:0006350transcription1.28526040306994e-07
GO:0010468regulation of gene expression1.94151723713076e-07
GO:0031323regulation of cellular metabolic process3.29084677911261e-07
GO:0050794regulation of cellular process6.13238654211701e-07
GO:0016070RNA metabolic process7.27563497338756e-07
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process1.20682343817744e-06
GO:0010467gene expression1.28229738144171e-06
GO:0043283biopolymer metabolic process3.34520698961319e-06
GO:0003676nucleic acid binding1.16785624495997e-05
GO:0003700transcription factor activity1.55499946371682e-05
GO:0007275multicellular organismal development0.00010835014899739
GO:0032501multicellular organismal process0.000115261877887468
GO:0043170macromolecule metabolic process0.000271144404853417
GO:0007420brain development0.000294810163091713
GO:0030900forebrain development0.000481132545249111
GO:0048666neuron development0.000612359123428026
GO:0007417central nervous system development0.000775517727305473
GO:0048856anatomical structure development0.000775517727305473
GO:0044238primary metabolic process0.000905910292692037
GO:0048731system development0.000915354416258053
GO:0044237cellular metabolic process0.000915354416258053
GO:0005667transcription factor complex0.0010319370587749
GO:0007399nervous system development0.00105563528805409
GO:0030182neuron differentiation0.00144262815090391
GO:0032502developmental process0.00149242453091425
GO:0007409axonogenesis0.00177430338629772
GO:0048667neuron morphogenesis during differentiation0.00208792384673866
GO:0048812neurite morphogenesis0.00208792384673866
GO:0008038neuron recognition0.00217910028963226
GO:0048699generation of neurons0.00222458909236768
GO:0005634nucleus0.00226916841375991
GO:0044451nucleoplasm part0.00262943763722978
GO:0022008neurogenesis0.00286207671032103
GO:0000904cellular morphogenesis during differentiation0.00291468213444351
GO:0005654nucleoplasm0.00309812654676973
GO:0048513organ development0.00309812654676973
GO:0007411axon guidance0.0032570022222967
GO:0031175neurite development0.0032570022222967
GO:0048869cellular developmental process0.00353719730615721
GO:0030154cell differentiation0.00353719730615721
GO:0031981nuclear lumen0.00691639763886853
GO:0032990cell part morphogenesis0.00937243738238856
GO:0048858cell projection morphogenesis0.00937243738238856
GO:0030030cell projection organization and biogenesis0.00937243738238856
GO:0043233organelle lumen0.0117109348003719
GO:0031974membrane-enclosed lumen0.0117109348003719
GO:0031234extrinsic to internal side of plasma membrane0.0126582396021272
GO:0031017exocrine pancreas development0.0126582396021272
GO:0045780positive regulation of bone resorption0.0126582396021272
GO:000550211-cis retinal binding0.0126582396021272
GO:0007610behavior0.014656350765791
GO:0045595regulation of cell differentiation0.0167368999207396
GO:0030902hindbrain development0.0168607545440724
GO:0050808synapse organization and biogenesis0.0179072174004843
GO:0008037cell recognition0.0179072174004843
GO:0016199axon midline choice point recognition0.0226121789953236
GO:0021985neurohypophysis development0.0226121789953236
GO:0040014regulation of multicellular organism growth0.0237680273215628
GO:0006357regulation of transcription from RNA polymerase II promoter0.0262744348725975
GO:0035264multicellular organism growth0.0306397961167397
GO:0021854hypothalamus development0.0306397961167397
GO:0014002astrocyte development0.0306397961167397
GO:0021979hypothalamus cell differentiation0.0306397961167397
GO:0017074procollagen N-endopeptidase activity0.0306397961167397
GO:0006366transcription from RNA polymerase II promoter0.0346492066172554
GO:0044428nuclear part0.0353018013867202
GO:0016198axon choice point recognition0.0386979496977745
GO:0060024rhythmic synaptic transmission0.0386979496977745
GO:0032989cellular structure morphogenesis0.0441591472987605
GO:0000902cell morphogenesis0.0441591472987605
GO:0004994somatostatin receptor activity0.0459446533668452
GO:0016188synaptic vesicle maturation0.0459446533668452



Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}