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MacroAPE 1083:5-GGTGRTTDTT

From FANTOM5_SSTAR

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Full Name: 5-GGTGRTTDTT,CNhs13795,BestGuess:HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq(0.710333748376522),T:1718.0(38.68%),B:12982.1(29.64%),P:1e-37

Motif matrix
POACGT
11.718616.762951.772147.748
2350.472243.9561015.338108.234
3414.0381.718429.5872.744
41.7181.7181168.24546.324
5670.02175.236486.194388.268
6331.5741.7185.1541379.554
71.7181.71827.4881687.076
8625.3521.718534.298556.632
9276.598104.798352.19984.414
101.7181.7181.7181712.846

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

FOXI1#MA0042.110.0009449290.4497860.89957210GGTGATTATTGGATGTTTGTTT+
Pax4#MA0068.1190.001944710.9256830.907210GGTGATTATTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
GSM1#MA0308.180.002858821.36080.907210GGTGATTATTTATACTCCGGAGTTTTTTAAT-
EDS1#MA0294.1-40.004811692.2903616GGTGATTATTATTTTTCCG-
TBP#MA0108.210.009655164.59586110GGTGATTATTCCCCGCCTTTTATAC-
dl_1#MA0022.1-10.01005014.7838319GGTGATTATTGGGGTTTTTCCC+
RGT1#MA0367.1-30.01024724.8776817GGTGATTATTAATTTTTCCGG+
TBP#MA0108.210.01025154.87972110GGTGATTATTCCCCGCCTTTTATAC-
Gfi#MA0038.110.01077125.1270819GGTGATTATTCAGTGATTTG-
SUM1#MA0398.1-10.0117715.6030119GGTGATTATTAAAATTTTT+
HNF1A#MA0046.100.01663997.9206110GGTGATTATTGGTAATTATTAACC-
Foxd3#MA0041.100.01674067.96852110GGTGATTATTGAATGTTTGTTT+
CG4328#MA0182.1-40.02016429.5981416GGTGATTATTTTTATTA+