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UBERON:0004637

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Name:otic capsule
Definition:"The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500
Xrefs:
links:

AAO:0010143
SCTID:361515007

VHOG:0000854
Synonyms: "auditory capsule" RELATED [VHOG:0000854]
"otic capsule" EXACT [ZFA:0001500]
"periotic" RELATED []
"periotic capsule" RELATED [VHOG:0000854]
Comments:Taxon notes: developmental relationships need to be checked

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0010351(otic capsule cartilage condensation)
part_of:UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear)



Children

part of:UBERON:0010113 (future membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_ef0848008da7a18a37873e78b0320066p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ef0848008da7a18a37873e78b0320066p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_ef0848008da7a18a37873e78b0320066p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_ef0848008da7a18a37873e78b0320066p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_ef0848008da7a18a37873e78b0320066p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ef0848008da7a18a37873e78b0320066p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ef0848008da7a18a37873e78b0320066p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ef0848008da7a18a37873e78b0320066p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066p1@Otog
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ef0848008da7a18a37873e78b0320066p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_ef0848008da7a18a37873e78b0320066p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_ef0848008da7a18a37873e78b0320066p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_ef0848008da7a18a37873e78b0320066p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_ef0848008da7a18a37873e78b0320066p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_ef0848008da7a18a37873e78b0320066p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_ef0848008da7a18a37873e78b0320066p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ef0848008da7a18a37873e78b0320066p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_ef0848008da7a18a37873e78b0320066p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_ef0848008da7a18a37873e78b0320066p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_ef0848008da7a18a37873e78b0320066p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_ef0848008da7a18a37873e78b0320066p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_ef0848008da7a18a37873e78b0320066p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_ef0848008da7a18a37873e78b0320066p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_ef0848008da7a18a37873e78b0320066p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_ef0848008da7a18a37873e78b0320066p7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_ef0848008da7a18a37873e78b0320066p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_ef0848008da7a18a37873e78b0320066p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_ef0848008da7a18a37873e78b0320066p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_ef0848008da7a18a37873e78b0320066p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_ef0848008da7a18a37873e78b0320066p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_ef0848008da7a18a37873e78b0320066p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_ef0848008da7a18a37873e78b0320066p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_ef0848008da7a18a37873e78b0320066p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_ef0848008da7a18a37873e78b0320066p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_ef0848008da7a18a37873e78b0320066p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_ef0848008da7a18a37873e78b0320066p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_ef0848008da7a18a37873e78b0320066p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ef0848008da7a18a37873e78b0320066p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_ef0848008da7a18a37873e78b0320066p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_ef0848008da7a18a37873e78b0320066p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_ef0848008da7a18a37873e78b0320066p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_ef0848008da7a18a37873e78b0320066p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_ef0848008da7a18a37873e78b0320066p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_ef0848008da7a18a37873e78b0320066p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_ef0848008da7a18a37873e78b0320066p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_ef0848008da7a18a37873e78b0320066p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_ef0848008da7a18a37873e78b0320066p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_ef0848008da7a18a37873e78b0320066p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_ef0848008da7a18a37873e78b0320066p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_ef0848008da7a18a37873e78b0320066p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_ef0848008da7a18a37873e78b0320066p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_ef0848008da7a18a37873e78b0320066p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_ef0848008da7a18a37873e78b0320066p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_ef0848008da7a18a37873e78b0320066p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_ef0848008da7a18a37873e78b0320066p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_ef0848008da7a18a37873e78b0320066p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_ef0848008da7a18a37873e78b0320066p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_ef0848008da7a18a37873e78b0320066p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_ef0848008da7a18a37873e78b0320066p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_ef0848008da7a18a37873e78b0320066p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_ef0848008da7a18a37873e78b0320066p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_ef0848008da7a18a37873e78b0320066p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_ef0848008da7a18a37873e78b0320066p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_ef0848008da7a18a37873e78b0320066p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_ef0848008da7a18a37873e78b0320066p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_ef0848008da7a18a37873e78b0320066p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_ef0848008da7a18a37873e78b0320066p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_ef0848008da7a18a37873e78b0320066p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_ef0848008da7a18a37873e78b0320066p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_ef0848008da7a18a37873e78b0320066p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_ef0848008da7a18a37873e78b0320066p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_ef0848008da7a18a37873e78b0320066p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_ef0848008da7a18a37873e78b0320066p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_ef0848008da7a18a37873e78b0320066p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_ef0848008da7a18a37873e78b0320066p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_ef0848008da7a18a37873e78b0320066p6@Tecta










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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