Coexpression cluster:C2143

Full id: C2143_Mesenchymal_Alveolar_Osteoblast_Renal_Adipocyte_Placental_Fibroblast

Phase1 CAGE Peaks

Hg19::chr11:61560053..61560091,-	p1@C11orf10
Hg19::chr17:7307407..7307424,-	p1@C17orf61 p1@PLSCR3
Hg19::chr19:5903739..5903809,-	p1@FUT5 p1@NDUFA11
Hg19::chr2:113342163..113342210,+	p1@CHCHD5

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0017060	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity	0.0082879592865696
GO:0046920	alpha(1,3)-fucosyltransferase activity	0.0082879592865696
GO:0019317	fucose catabolic process	0.0082879592865696
GO:0042355	L-fucose catabolic process	0.0082879592865696
GO:0042354	L-fucose metabolic process	0.0082879592865696
GO:0006004	fucose metabolic process	0.00941758099038374
GO:0008417	fucosyltransferase activity	0.00968622692758105
GO:0019320	hexose catabolic process	0.0480923729825549
GO:0046365	monosaccharide catabolic process	0.0480923729825549
GO:0046164	alcohol catabolic process	0.0480923729825549
GO:0006486	protein amino acid glycosylation	0.0480923729825549
GO:0043413	biopolymer glycosylation	0.0480923729825549
GO:0009101	glycoprotein biosynthetic process	0.0480923729825549
GO:0044275	cellular carbohydrate catabolic process	0.0480923729825549
GO:0016052	carbohydrate catabolic process	0.0480923729825549
GO:0009100	glycoprotein metabolic process	0.0488322814096535

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

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No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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This analysis result is provided for C0 - C305 clusters.