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{{Loading|loadingimage=sprites.gif}}<html>
{{Loading|loadingimage=sprites.gif}}<html>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
 
.content, .sidebar
.content, .sidebar
{
{
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table.details th { width:10%; background-color: #5A5FB5; color: white;}
table.details th { width:10%; background-color: #5A5FB5; color: white;}
</style>
</style>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/ZeroClipboard.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.js">
</script>
<script type="text/javascript">
<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
Line 60: Line 58:
}
}


     var oTable = $('#m_pval_table').dataTable({
     $('#m_pval_table').DataTable({
"sScrollY": "300px",
dom: 'lfrtip',
"bScrollCollapse": true,
scrollY: "300px",
"bPaginate": true,
scrollCollapse: true,
"bFilter": true,
                 pLength: 10,
"bInfo": true,
lengthMenu: [[5,10,-1], [5,10,"All"]],
                 "iDisplayLength": 10,
data: m_data,
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
columnDefs: [
"aaData": m_data,
          { targets: 0, orderable: false},
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
          { targets: 1, width: "50pt"}
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt", "aTargets": [1],"fnRender": function (obj) {                     
columns: [{ title: "FF samples",  orderable: false, render: function(data, type, row, meta) {
                   var num =obj.aData[obj.iDataColumn];
return '<a href="/resource_browser/index.php/FF:'+row[0].split('.').pop()+'">'+decodeURIComponent(row[ 0 ])+'</a>';
} },
{ title: "p-value",  type: "numeric", width: "50pt", render: function (data, type, row, meta) {                     
                   var num =row[1];
                   return exp_converter(num,2,"e") ;
                   return exp_converter(num,2,"e") ;
} }],
}}],
"aaSorting": [[ 1, "asc" ]],
order: [[ 1, "asc" ]],
});
});
 
 
var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
 
$('#export_tool').before( oTableTools.dom.container );




// GREAT table for human start
// GREAT table for human start
$('#great_table_human').dataTable({
$('#great_table_human').DataTable({
"sScrollY": "300px",
dom: 'lfrtip',
"bScrollCollapse": true,
scrollY: "300px",
"bPaginate": true,
scrollCollapse: true,
"bFilter": true,
        pLength: 10,
"bInfo": true,
        lengthMenu: [[5,10,-1], [5,10,"All"]],
                "iDisplayLength": 10,
order: [[ 2, "asc" ]],
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
columnDefs: [
"aaSorting": [[ 2, "asc" ]],
{ targets: 0, orderable: false },
"aoColumnDefs": [{ "bSortable": false, "aTargets": [0,1] },{ "sType": "numeric", "sWidth": "80pt", "aTargets": [2],"fnRender": function (obj) {                  
{ targets: 1, orderable: false },
                   var num =obj.aData[obj.iDataColumn];
{ targets: 2, type: "html-number", width: "80pt" }
],
columns: [
{title: :""},
{title: :""},
{title: "FF samples", render: function(data, type, row, meta) {
                   var num =row[1];
                   return exp_converter(num,2,"e") ;
                   return exp_converter(num,2,"e") ;
} }]
}}]
});
});
// GREAT table for human end
// GREAT table for human end


// GREAT table for mouse start
// GREAT table for mouse start
$('#great_table_mouse').dataTable({
$('#great_table_mouse').DataTable({
"sScrollY": "300px",
scrollY: "300px",
"bScrollCollapse": true,
scrollCollapse: true,
"bPaginate": true,
        pLength: 10,
"bFilter": true,
        lengthMenu: [[5,10,-1], [5,10,"All"]],
"bInfo": true,
order: [[ 2, "asc" ]],
                "iDisplayLength": 10,
columnDefs: [
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
{ targets: 0, orderable: false },
"aaSorting": [[ 2, "asc" ]],
{ targets: 1, orderable: false },
"aoColumnDefs": [{ "bSortable": false, "aTargets": [0,1] },{ "sType": "numeric", "sWidth": "80pt", "aTargets": [2], "fnRender": function (obj) {                  
{ targets: 2, type: "html-number", width: "80pt" }
                   var num =obj.aData[obj.iDataColumn];
columns: [
{title: :""},
{title: :""},
{title: "FF samples", render: function(data, type, row, meta) {
                   var num =row[1];
                   return exp_converter(num,2,"e") ;
                   return exp_converter(num,2,"e") ;
} }]
}}]
});
});
});
// GREAT table for mouse end
// GREAT table for mouse end

Revision as of 13:22, 17 January 2020

name:{{{name}}}

Association to promoter expression in human samples<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data



Association to promoter expression in mouse samples <b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data



GREAT analysis results for human <b>Summary:</b>Genomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon<br><br>link to source dataset <br>data

GO IDGO Termp-value
{{{great_results_human}}}


GREAT analysis results for mouseGenomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon <br><br>link to source dataset <br>data

GO IDGO Termp-value
{{{great_results_mouse}}}
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